View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1633_low_17 (Length: 423)
Name: NF1633_low_17
Description: NF1633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1633_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 8 - 402
Target Start/End: Original strand, 11402333 - 11402727
Alignment:
| Q |
8 |
aagcaaaggaggaagccttgaaaagtcaagtgaacttcaataatattaatgaatccaatcaaatgggagaggacatggaaacttcgatcaaaagagagaa |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11402333 |
aagcaaaggaggaagccttgaaaagtcaagtgaacttcaataacattaatgaatccaatcaaatgggagaggacatgaaaacttcgatcaaaagagagaa |
11402432 |
T |
|
| Q |
108 |
caatttcaatccaaaaggtggaaacaattttggttctatcaactatatatggcaaaggaagaagttattacaaccaagagaggagaaattatgttttcac |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11402433 |
caatttcaatccaaaaggtggaaacaattttggttctatcaattatatatggcaaaggaagaagttattacaaccaagagaggagaaattatgttttcac |
11402532 |
T |
|
| Q |
208 |
cgcgaaaagtttgagcgcaaagcagacgattgaagatataaacatcatgcacagattgcagaaaatttagatcaaaacaattgtgagtcttatgaaaatc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
11402533 |
cgcgaaaagtttgagcgcaaagcagacgattgaagatataaacatcatgcacagattgcaaaaaatttatatcaaaacaattgtgagtcttatgaaaatc |
11402632 |
T |
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| Q |
308 |
catatggtttaattttagcaagcaatacactttcacaagactcatcagtgttttgatatgaattttctgccacgtttgcctgatgttgtatttgc |
402 |
Q |
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| T |
11402633 |
catatggtttaattttagcaagcaatacactttcacaagactcattagtgttttgatatgaattttctgccacgtttgcctgatgttgtatttgc |
11402727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 160 - 340
Target Start/End: Original strand, 12643834 - 12644017
Alignment:
| Q |
160 |
caaaggaagaagttattacaaccaagagaggagaaattat----gttttcaccgcgaaaagtttgagcgcaaagcagacgattgaagatataaacatcat |
255 |
Q |
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| T |
12643834 |
caaaggaaaaggatattacaaccaagagagaacaaattatagttgtttccactatgaaaagtttgggcacaaaacagctgattgcagatacaaacatcga |
12643933 |
T |
|
| Q |
256 |
gcacagattgcagaaaatttagatcaaaacaattgtgagtcttatgaaaatccatatggtttaattttagcaagcaatacacttt |
340 |
Q |
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| T |
12643934 |
gaaaacatgccagaaaattcatatcaaaa-actagtgagtcttatgaaattccatatagtttatttttagcaagcaatacacttt |
12644017 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 157 - 347
Target Start/End: Original strand, 45966409 - 45966603
Alignment:
| Q |
157 |
tggcaaaggaagaagttattacaaccaagagaggagaaattatg----ttttcaccgcgaaaagtttgagcgcaaagcagacgattgaagatataaacat |
252 |
Q |
| |
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||||| ||||||| ||||||||||||||||||| | |||| ||| |||| | | | ||||| || || |||||||| || || |||||||||||| |
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| T |
45966409 |
tggcagaggaagaggttattacaaccaagagagaacaaataatggttgttttaattgtggaaagtatgggcacaaagcagctgactgcagatataaacat |
45966508 |
T |
|
| Q |
253 |
catgcacagattgcagaaaatttagatcaaaacaattgtgagtcttatgaaaatccatatggtttaattttagcaagcaatacactttcacaaga |
347 |
Q |
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| T |
45966509 |
caagcaaatatggcagagaattcatatcaacattttggtgagtcttctcaaaatcaacatagtttatttttagcaagcaatacactttcagaaga |
45966603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 157 - 347
Target Start/End: Complemental strand, 42913013 - 42912819
Alignment:
| Q |
157 |
tggcaaaggaagaagttattacaaccaagagaggagaaattatg----ttttcaccgcgaaaagtttgagcgcaaagcagacgattgaagatataaacat |
252 |
Q |
| |
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||||| ||||||| ||||||||||||||||||| | |||| ||| |||| | | | ||||| || || |||||||| || || |||||||||||| |
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| T |
42913013 |
tggcagaggaagaggttattacaaccaagagagaacaaataatggttgttttaattgtggaaagtatgggcacaaagcagctgactgcagatataaacat |
42912914 |
T |
|
| Q |
253 |
catgcacagattgcagaaaatttagatcaaaacaattgtgagtcttatgaaaatccatatggtttaattttagcaagcaatacactttcacaaga |
347 |
Q |
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|| ||| | || ||||| |||| | ||||| | | ||||||||| | |||||| | || ||||| ||||||||||||||||||||||| |||| |
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| T |
42912913 |
caagcaaatatggcagagaattcatatcaacattttggtgagtcttctcaaaatcaacatagtttatttttagcaagcaatacactttcagaaga |
42912819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 347
Target Start/End: Original strand, 42301083 - 42301189
Alignment:
| Q |
241 |
agatataaacatcatgcacagattgcagaaaatttagatcaaaacaattgtgagtcttatgaaaatccatatggtttaattttagcaagcaatacacttt |
340 |
Q |
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|||||||||||||| ||| | || ||||| |||| | ||||| | | ||||||||| | |||||| | || ||||| ||||||||||||||||||||| |
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| T |
42301083 |
agatataaacatcaggcaaatatggcagagaattcatatcaacattttggtgagtcttctcaaaatcaacatagtttatttttagcaagcaatacacttt |
42301182 |
T |
|
| Q |
341 |
cacaaga |
347 |
Q |
| |
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|| |||| |
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| T |
42301183 |
cagaaga |
42301189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 157 - 347
Target Start/End: Complemental strand, 29282154 - 29281960
Alignment:
| Q |
157 |
tggcaaaggaagaagttattacaaccaagagaggagaaattatg----ttttcaccgcgaaaagtttgagcgcaaagcagacgattgaagatataaacat |
252 |
Q |
| |
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||||| ||||||| ||||||||||||||||||| | |||| ||| |||| | | | ||||| || || |||||||| || || |||||||||||| |
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| T |
29282154 |
tggcagaggaagaggttattacaaccaagagagaacaaataatggttgttttaattgtggaaagtatgggcacaaagcagctgactgcagatataaacat |
29282055 |
T |
|
| Q |
253 |
catgcacagattgcagaaaatttagatcaaaacaattgtgagtcttatgaaaatccatatggtttaattttagcaagcaatacactttcacaaga |
347 |
Q |
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|| ||| | || ||||| |||| | ||||| | | ||||||||| | |||||| | || ||||| ||||||||||||||||||||||| |||| |
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| T |
29282054 |
caagcaaatatggcagagaattcatatcaacattttggtgagtcttctcaaaatcaacatagtttatttttagcaagcaatacactttcagaaga |
29281960 |
T |
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