View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1633_low_20 (Length: 357)
Name: NF1633_low_20
Description: NF1633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1633_low_20 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 14 - 343
Target Start/End: Original strand, 3375413 - 3375738
Alignment:
| Q |
14 |
cataggttgtgaaggatattttgaatgaggtatcattgctaaccatgcagtatcgtaactagaagggcatacaaaattatagagatcaaaattcgatgag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3375413 |
cataggttgtgaaggatattttgaatgaggtatcattgctaaccatgcagtatcgtaagtagaagggcatacaaaattatagagatcaaaattcgatgag |
3375512 |
T |
|
| Q |
114 |
aatatatttttctttatcttttgaaccctacgctcaatgcatgataagggaagttccataggaaatatttaagcaaggatggatatacaaaaataaagtt |
213 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3375513 |
aatatatttttctttatctttcgaaccctacgctcaatgcatgataagggaagttccataggaaatatttaagcaa----ggatatacaaaaataaagtt |
3375608 |
T |
|
| Q |
214 |
ttgcttgctaatctatagcttgatgagatcatcgttaagcaaatacgttgtatttataatgtgctgtgcgttggcatcaatcaatattctacatctgaaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3375609 |
ttgcttgctaatctatagcttgatgagatcatcgttaagcaaatacgttgtatttataatgtgctgtgcgttggcatcaatcaatattctacatctgaaa |
3375708 |
T |
|
| Q |
314 |
gtgttcacacgtcacttcattcgcataatt |
343 |
Q |
| |
|
||||||||||||||||||||| |||||||| |
|
|
| T |
3375709 |
gtgttcacacgtcacttcattagcataatt |
3375738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 14 - 227
Target Start/End: Original strand, 3350007 - 3350220
Alignment:
| Q |
14 |
cataggttgtgaaggatattttgaatgaggtatcattgctaaccatgcagtatcgtaactagaagggcatacaaaattatagagatcaaaattcgatgag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
3350007 |
cataggttgtgaaggatattttgaatgaggtatcattgctaaccatgcagtatcgtaagtagaagggaatacaaaattatagagatcaaaattcgatgag |
3350106 |
T |
|
| Q |
114 |
aatatatttttctttatcttttgaaccctacgctcaatgcatgataagggaagttccataggaaatatttaagcaaggatggatatacaaaaataaagtt |
213 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3350107 |
aatatatttttctttatctttcgaaccctacgctcaatgcatgataagggaagttccataggaaatatttaagcaaggttggatatacaaaaataaagtt |
3350206 |
T |
|
| Q |
214 |
ttgcttgctaatct |
227 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
3350207 |
ttgcttgctaatct |
3350220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University