View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1633_low_22 (Length: 340)
Name: NF1633_low_22
Description: NF1633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1633_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 124 - 332
Target Start/End: Complemental strand, 34761519 - 34761317
Alignment:
| Q |
124 |
actatcactcacttcttggtaattgttctgtttagaattagaattagaatggaagcaaaggaatactcagtttccttgaaaagacataggaaagaaccat |
223 |
Q |
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| T |
34761519 |
actatcactcacttcttggtaattgttctgtttagaattagaat------ggaagcaaaggaatactcagtttccttgaaaagacataggaaagaaccat |
34761426 |
T |
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| Q |
224 |
attttgtagcacaccacacaaaaagacaacaccatattgcctcaaaacaagcatgtacacacaaccattctctcatattgtccacttctcaaaacactcc |
323 |
Q |
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| T |
34761425 |
attttgtagcacaccacacaaaaagacaacaccatattgcctcaaaacaagcatgtacacacaaccattctctcatattgtccacttctcaaaacactcc |
34761326 |
T |
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| Q |
324 |
acctatgct |
332 |
Q |
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||||||||| |
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| T |
34761325 |
acctatgct |
34761317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 34761652 - 34761547
Alignment:
| Q |
1 |
agaagagaacaggaaacaagaaagtacagtcctaccttaatagtagtagattcttactctattttatatgttggtgtgatgtatgatcataaaattcaaa |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34761652 |
agaagagaacaggaaacaagaaattacagtcctaccttaatagtagtagattcttactctattttatatgttggtgtgatgtatgatcataaaattcaaa |
34761553 |
T |
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| Q |
101 |
ccacta |
106 |
Q |
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| T |
34761552 |
ccacta |
34761547 |
T |
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