View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1633_low_24 (Length: 332)
Name: NF1633_low_24
Description: NF1633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1633_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 66 - 326
Target Start/End: Complemental strand, 24259802 - 24259533
Alignment:
| Q |
66 |
ttgtgtaaaacatttttaaactgacagtgtatacaaattaaatctgatagttctctatccacaagaaaaattgaaataacaaaaat---------aagaa |
156 |
Q |
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| T |
24259802 |
ttgtgtaaaacatttttaaactgacagtgtatacaaattaaatctgatagttctctatccacaagaaaaattgaagtaacaaaaattgcaaaaataagaa |
24259703 |
T |
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| Q |
157 |
ttttgattacctggatgtgtgagagcttttcgatttccatgagcagaactaacgacacgcatgataaaagaagcaattggaggattatctcttgtaacat |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24259702 |
ttttgattacctggatgtgtgagagcttttcgatttccatgagcagaactaacgacacgcatgataaaagaagcaattggaggattatctcttgtaacat |
24259603 |
T |
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| Q |
257 |
tggatatttcaggaaacaatttaacaaacacaaccttgtgcttctccacagacaaataccttcatctcac |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24259602 |
tggatatttcaggaaacaatttaacaaacacaaccttgtgcttctccacagacaaataccttcatttcac |
24259533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 1018607 - 1018647
Alignment:
| Q |
67 |
tgtgtaaaacatttttaaactgacagtgtatacaaattaaa |
107 |
Q |
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| T |
1018607 |
tgtgtaaaacatttgtacactgacagtgtatataaattaaa |
1018647 |
T |
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