View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1633_low_25 (Length: 317)
Name: NF1633_low_25
Description: NF1633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1633_low_25 |
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| [»] scaffold0209 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 225
Target Start/End: Complemental strand, 10868817 - 10868664
Alignment:
| Q |
89 |
ttatagttctaatcacataactcacaaaattgaagctggattatactacatatatatcatccctacatc-----------------actgctctttcatg |
171 |
Q |
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| T |
10868817 |
ttatagttctaatcacataactcacaaaactgaagctggattatattgcatatataccagccctacaccctgccatatattacattaccgctctttcacg |
10868718 |
T |
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| Q |
172 |
gcaccatgtaatgtgaccattgaaaattgaaacttaacagtaagaaagtgtcca |
225 |
Q |
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| T |
10868717 |
gcaccatgtaatgtgagcatagaaaattgaaacttaacagtaagaaagtgtcca |
10868664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 10885648 - 10885721
Alignment:
| Q |
152 |
tacatcactgctctttcatggcaccatgtaatgtgaccattgaaaattgaaacttaacagtaagaaagtgtcca |
225 |
Q |
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| T |
10885648 |
tacattactgctttttcatggcaccatgtaattcgagcatacaaaattgaaacttaagagtaagaaagtgtcca |
10885721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 31607255 - 31607214
Alignment:
| Q |
179 |
gtaatgtgaccattgaaaattgaaacttaacagtaagaaagt |
220 |
Q |
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| T |
31607255 |
gtaatgtgaccatagaaaattgaaacttaacagtaagaaagt |
31607214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 5976 - 5936
Alignment:
| Q |
258 |
ctaaactgaattcaccatacaaaagagacaattgcatcttc |
298 |
Q |
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| T |
5976 |
ctaaattgaattcaccacacaaaagagactattgcatcttc |
5936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 19430 - 19390
Alignment:
| Q |
258 |
ctaaactgaattcaccatacaaaagagacaattgcatcttc |
298 |
Q |
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| T |
19430 |
ctaaattgaattcaccacacaaaagagactattgcatcttc |
19390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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