View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1633_low_32 (Length: 249)
Name: NF1633_low_32
Description: NF1633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1633_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 23 - 239
Target Start/End: Complemental strand, 3430386 - 3430161
Alignment:
| Q |
23 |
ccaccgcatccatcaccgtcgccgcgttgtaggacaaagaataagtcaaaattgatcaataccttgaaacgctgctcatcagcgccactgctaatttcac |
122 |
Q |
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| T |
3430386 |
ccaccgcatccatcaccgtcgccgcgttgtaggacaaagaataagtcaaaattgatcaataccttgaaacgctgctcatcagcgccactgctgatttcac |
3430287 |
T |
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| Q |
123 |
gaggaaatcttattcatgaagatgatgat---------gatggtgttggtctctttgctcaatattctttcagaagtggaagaggaggaacacttttccg |
213 |
Q |
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| T |
3430286 |
gaggaaatcttattcatgaagatgatgatgatgatgatgatggtgttggtctctttgctcaatattctttcagaagtggaagaggaggaacacttttccg |
3430187 |
T |
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| Q |
214 |
acctcaaacattttcaaatgcctttg |
239 |
Q |
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| T |
3430186 |
acctcaaacattttcaaatgcctttg |
3430161 |
T |
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