View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1633_low_33 (Length: 240)
Name: NF1633_low_33
Description: NF1633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1633_low_33 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 506241 - 506469
Alignment:
| Q |
1 |
gaattgtggtcctaaccagtgtgtgtattatactaaaggtgttattaggtttggacaacagtttgttgtatcaatcaactgccatatacttttcatatca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
506241 |
gaattgtggtcctaaccagtgtgtgtattatactaaaggtgttattaggtttggagaacagtttgttgtatcaatcaactgccatatacttttcatatca |
506340 |
T |
|
| Q |
101 |
gattcagaactctgatccctatgaaagagtcttcttttaagtggggtttttgtagaggtttaagtgattctgggaccattacaagactctcagacaagtg |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
506341 |
gattcagaactctgatccctctgaaagagtcttcttttaagtggggtttttgtagaggtttaagtgattctgggaccattacaagactctcagacaagtg |
506440 |
T |
|
| Q |
201 |
atgttttgatgtgaagtaacctcattcat |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
506441 |
atgttttgatgtgaagtaacctcattcat |
506469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University