View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1633_low_39 (Length: 233)

Name: NF1633_low_39
Description: NF1633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1633_low_39
NF1633_low_39
[»] chr2 (39 HSPs)
chr2 (1-226)||(39222497-39222722)
chr2 (68-195)||(39603169-39603296)
chr2 (1-172)||(39136906-39137077)
chr2 (1-172)||(39390036-39390207)
chr2 (18-172)||(38792735-38792889)
chr2 (1-172)||(39415645-39415816)
chr2 (1-123)||(39222138-39222260)
chr2 (1-123)||(39221928-39222050)
chr2 (59-172)||(39415451-39415564)
chr2 (77-172)||(39390532-39390627)
chr2 (1-89)||(39389868-39389956)
chr2 (77-172)||(39390322-39390417)
chr2 (77-172)||(39137317-39137412)
chr2 (77-168)||(39451746-39451837)
chr2 (1-75)||(39390708-39390782)
chr2 (1-103)||(39602799-39602901)
chr2 (80-161)||(39602993-39603074)
chr2 (92-203)||(39222310-39222421)
chr2 (1-65)||(39389469-39389533)
chr2 (94-173)||(39473898-39473977)
chr2 (1-75)||(39221430-39221504)
chr2 (92-158)||(39389707-39389773)
chr2 (92-205)||(39192590-39192703)
chr2 (92-205)||(39198270-39198383)
chr2 (77-161)||(38792998-38793082)
chr2 (80-172)||(38793240-38793332)
chr2 (154-226)||(39458906-39458978)
chr2 (56-119)||(39192680-39192743)
chr2 (56-119)||(39198360-39198423)
chr2 (138-204)||(39221163-39221229)
chr2 (127-172)||(39221711-39221756)
chr2 (117-172)||(38792476-38792531)
chr2 (165-212)||(39152273-39152320)
chr2 (46-149)||(39222238-39222341)
chr2 (46-89)||(39398184-39398227)
chr2 (68-167)||(39458587-39458686)
chr2 (46-119)||(39467974-39468047)
chr2 (153-226)||(39487829-39487902)
chr2 (17-117)||(39451293-39451393)
[»] chr7 (3 HSPs)
chr7 (77-172)||(19807267-19807362)
chr7 (56-123)||(19807190-19807257)
chr7 (100-173)||(19807014-19807087)
[»] chr5 (3 HSPs)
chr5 (1-120)||(33560522-33560641)
chr5 (1-102)||(33560624-33560725)
chr5 (98-162)||(17059254-17059318)
[»] chr3 (2 HSPs)
chr3 (153-207)||(51575181-51575235)
chr3 (156-204)||(51574601-51574649)


Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 39)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 39222722 - 39222497
Alignment:
Q  1 ttcaaattccttctcctttgattcaaactcctttattttgcatataagttggttatcttttgactctaactccttaacttggctttcaacctgcttcttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39222722 ttcaaattccttctcctttgattcaaactcctttattttgcatataagttggttatcttttgactctaactccttaacttggctttcaacctgcttcttt 39222623  T
Q  101 ttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttcactcggccttcaaagtcatcctctttagattcaaactcct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  39222622 ttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttcattcggccttcaaagtcatcctctttagattcaaactcct 39222523  T
Q  201 tcactcggccataaaatttcttctct 226  Q
    |||||||||||| |||||||||||||    
T  39222522 tcactcggccatcaaatttcttctct 39222497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 68 - 195
Target Start/End: Complemental strand, 39603296 - 39603169
Alignment:
Q  68 aactccttaacttggctttcaacctgcttctttttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttcactcggc 167  Q
    |||||||  |||||||||||||  |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39603296 aactcctccacttggctttcaaaatgcttctttttagattccagctccttcgcttgaatttcaaattctctctcttttgattcatgctccttcgctcggc 39603197  T
Q  168 cttcaaagtcatcctctttagattcaaa 195  Q
    ||||||| ||||||||||| ||||||||    
T  39603196 cttcaaattcatcctcttttgattcaaa 39603169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 39137077 - 39136906
Alignment:
Q  1 ttcaaattccttctcctttgattcaaactcctttattttgcatataagttggttatcttttgactctaactccttaacttggctttcaacctgcttcttt 100  Q
    |||||||||| |||| ||||||| ||||||||| |||| |  || ||||||||| ||||||||||||||| |||| |||||| |||||| | | ||||||    
T  39137077 ttcaaattccatctcttttgatttaaactccttcatttggtctacaagttggttttcttttgactctaacgccttgacttggatttcaaacagtttcttt 39136978  T
Q  101 ttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttcactcggccttca 172  Q
    ||| ||||| ||||| |||||||  ||||||||||||||||||||||| ||||||||||||| |||||||||    
T  39136977 ttaaattgctgctccatcacttggctttcaaattctctctcttttgatgcatgctccttcacccggccttca 39136906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 39390036 - 39390207
Alignment:
Q  1 ttcaaattccttctcctttgattcaaactcctttattttgcatataagttggttatcttttgactctaactccttaacttggctttcaacctgcttcttt 100  Q
    ||||||||||||||||||  | ||||| || |||| ||| | || ||||| |||| |||| |||||||||||||||||||||||||| ||||||||||||    
T  39390036 ttcaaattccttctccttaaactcaaaatcttttacttttcctacaagttcgttacctttagactctaactccttaacttggctttcgacctgcttcttt 39390135  T
Q  101 ttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttcactcggccttca 172  Q
    ||||||| ||| ||||||| |||   |||||| ||||||||||| |||||||||||||||||||||| ||||    
T  39390136 ttagattccagttccttcatttggccttcaaaatctctctctttggattcatgctccttcactcggctttca 39390207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 38792889 - 38792735
Alignment:
Q  18 ttgattcaaactcctttattttgcatataagttggttatcttttgactctaactccttaacttggctttcaacctgcttctttttagattgcagctcctt 117  Q
    |||| ||||||||||| ||||||| || ||||||||||||||||||||| |||||||||||||| ||||||| |   |||| |||||||| | | |||||    
T  38792889 ttgactcaaactccttcattttgcgtacaagttggttatcttttgactccaactccttaacttgcctttcaaacaatttctgtttagattcctggtcctt 38792790  T
Q  118 cacttgaatttcaaattctctctcttttgattcatgctccttcactcggccttca 172  Q
    |||||||  |||||||||||||||||||||||| ||||||||||| |||||||||    
T  38792789 cacttgaccttcaaattctctctcttttgattcgtgctccttcacccggccttca 38792735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 39415645 - 39415816
Alignment:
Q  1 ttcaaattccttctcctttgattcaaactcctttattttgcatataagttggttatcttttgactctaactccttaacttggctttcaacctgcttcttt 100  Q
    |||||||||| |||| ||||||| ||||||||| |||| |  ||  ||||| |  |||||||||||||||||||| |||||| |||||| | ||||||||    
T  39415645 ttcaaattccctctcttttgatttaaactccttcatttggtctacgagttgctgttcttttgactctaactccttgacttggatttcaaacagcttcttt 39415744  T
Q  101 ttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttcactcggccttca 172  Q
    ||||||| |||||||||||| ||   |||||||||||||||||||||| ||||||| ||||| |||||||||    
T  39415745 ttagatttcagctccttcacctggccttcaaattctctctcttttgatgcatgctcattcacccggccttca 39415816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 39222260 - 39222138
Alignment:
Q  1 ttcaaattccttctcctttgattcaaactcctttattttgcatataagttggttatcttttgactctaactccttaacttggctttcaacctgcttcttt 100  Q
    |||||||||| |||| ||||||| ||||| | | | || || || |||||||||||||||||||| ||||||||| ||||||||||||| | ||||||||    
T  39222260 ttcaaattccctctcttttgatttaaacttcctcaattggcctacaagttggttatcttttgactttaactccttcacttggctttcaaacagcttcttt 39222161  T
Q  101 ttagattgcagctccttcacttg 123  Q
    ||||||| |||||||||||||||    
T  39222160 ttagattccagctccttcacttg 39222138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 39222050 - 39221928
Alignment:
Q  1 ttcaaattccttctcctttgattcaaactcctttattttgcatataagttggttatcttttgactctaactccttaacttggctttcaacctgcttcttt 100  Q
    |||||||| | |||| ||||||| ||||| | | | || || || |||||||||||||||||||| ||||||||| ||||||||||||| | ||||||||    
T  39222050 ttcaaattgcctctcttttgatttaaacttcctcaattggcctacaagttggttatcttttgactttaactccttcacttggctttcaaacagcttcttt 39221951  T
Q  101 ttagattgcagctccttcacttg 123  Q
    ||||||| |||||||||||||||    
T  39221950 ttagattccagctccttcacttg 39221928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 59 - 172
Target Start/End: Original strand, 39415451 - 39415564
Alignment:
Q  59 tttgactctaactccttaacttggctttcaacctgcttctttttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctcct 158  Q
    |||||||| |||||||| ||||| |||||||  |||||||||||||||| ||||||| |||||||  ||| ||||||||||||||||||||||  |||||    
T  39415451 tttgactccaactcctttacttgtctttcaaattgcttctttttagattccagctccctcacttggcttttaaattctctctcttttgattcacactcct 39415550  T
Q  159 tcactcggccttca 172  Q
    ||||| | ||||||    
T  39415551 tcacttgaccttca 39415564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 77 - 172
Target Start/End: Original strand, 39390532 - 39390627
Alignment:
Q  77 acttggctttcaacctgcttctttttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttcactcggccttca 172  Q
    |||||||||||||  |||||| ||||||||| ||| ||||||| |||   ||||||||||||||||||||||||||||||||||||||||| ||||    
T  39390532 acttggctttcaaaatgcttccttttagattccagttccttcatttggccttcaaattctctctcttttgattcatgctccttcactcggctttca 39390627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 39389868 - 39389956
Alignment:
Q  1 ttcaaattccttctcctttgattcaaactcctttattttgcatataagttggttatcttttgactctaactccttaacttggctttcaa 89  Q
    ||||||| || |||| ||||||||||||||| | ||||||| || |||||||||||||||||||||||||||||| ||||||| |||||    
T  39389868 ttcaaatcccctctcttttgattcaaactccatcattttgcctacaagttggttatcttttgactctaactccttcacttggccttcaa 39389956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 77 - 172
Target Start/End: Original strand, 39390322 - 39390417
Alignment:
Q  77 acttggctttcaacctgcttctttttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttcactcggccttca 172  Q
    |||||||||||||  |||||| ||||||||| ||| ||||||| |||   |||||||||||||||||||||| |||||||||||||||||| ||||    
T  39390322 acttggctttcaaaatgcttccttttagattccagttccttcatttggccttcaaattctctctcttttgatccatgctccttcactcggctttca 39390417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 77 - 172
Target Start/End: Complemental strand, 39137412 - 39137317
Alignment:
Q  77 acttggctttcaacctgcttctttttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttcactcggccttca 172  Q
    ||||||||||||| ||||||| |||||||||  || ||| ||| || || ||||||||||||| ||||||||||||||||| |||| |||||||||    
T  39137412 acttggctttcaaactgcttcattttagattctagatccatcattttaacttcaaattctctcacttttgattcatgctccatcacccggccttca 39137317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 77 - 168
Target Start/End: Complemental strand, 39451837 - 39451746
Alignment:
Q  77 acttggctttcaacctgcttctttttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttcactcggcc 168  Q
    |||||||||||||  |||||||||||||||| ||| ||||||||||    ||||||||||||| ||||||||||||||||| |||| |||||    
T  39451837 acttggctttcaaaatgcttctttttagattccagatccttcactttgccttcaaattctctcacttttgattcatgctccatcacccggcc 39451746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 39390708 - 39390782
Alignment:
Q  1 ttcaaattccttctcctttgattcaaactcctttattttgcatataagttggttatcttttgactctaactcctt 75  Q
    ||||||||||||||| ||||||||||||||||||| ||||| || || || ||||||||||||||| ||||||||    
T  39390708 ttcaaattccttctcttttgattcaaactcctttactttgcctacaaatttgttatcttttgactcaaactcctt 39390782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 39602901 - 39602799
Alignment:
Q  1 ttcaaattccttctcctttgattcaaactcctttattttgcatataagttggttatcttttgactctaactccttaacttggctttcaacctgcttcttt 100  Q
    ||||||||||||||  ||||||||||||||||||| || ||||| ||||||||||||| ||||||||||| | || | |||| ||||||  |||| ||||    
T  39602901 ttcaaattccttctgttttgattcaaactcctttacttggcatacaagttggttatctattgactctaacacattcaattggttttcaaagtgctccttt 39602802  T
Q  101 tta 103  Q
    |||    
T  39602801 tta 39602799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 161
Target Start/End: Complemental strand, 39603074 - 39602993
Alignment:
Q  80 tggctttcaacctgcttctttttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttca 161  Q
    ||||||||||  |||||||||||||||| ||||||| |||||||   |||||| ||||| ||||||||||||||||||||||    
T  39603074 tggctttcaaaatgcttctttttagattccagctccgtcacttggccttcaaactctctttcttttgattcatgctccttca 39602993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 92 - 203
Target Start/End: Complemental strand, 39222421 - 39222310
Alignment:
Q  92 tgcttctttttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttcactcggccttcaaagtcatcctctttagatt 191  Q
    ||||||||||| |||| ||| ||||||| |||   ||| ||| ||||||||||||||| ||||||||||||| |||||||||  |  | ||||||||| |    
T  39222421 tgcttctttttggattccagttccttcagttggccttcgaatcctctctcttttgatttatgctccttcacttggccttcaagttgcttctctttagact 39222322  T
Q  192 caaactccttca 203  Q
    ||||||||||||    
T  39222321 caaactccttca 39222310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 39389469 - 39389533
Alignment:
Q  1 ttcaaattccttctcctttgattcaaactcctttattttgcatataagttggttatcttttgact 65  Q
    |||||||||||| || |||| |||||||| ||||||||||| |||||||| ||||||||||||||    
T  39389469 ttcaaattccttttcttttgtttcaaacttctttattttgcctataagttcgttatcttttgact 39389533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 39473898 - 39473977
Alignment:
Q  94 cttctttttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttcactcggccttcaa 173  Q
    ||||||||||||||  ||| ||||||| ||  ||||||||||||||| |||||||| |||||||| ||||||||| ||||    
T  39473898 cttctttttagattctagccccttcacctggctttcaaattctctctgttttgatttatgctcctccactcggccatcaa 39473977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 39221504 - 39221430
Alignment:
Q  1 ttcaaattccttctcctttgattcaaactcctttattttgcatataagttggttatcttttgactctaactcctt 75  Q
    ||||||||||||||| ||||||||||||| ||||| ||||| || ||||| |||||||||  ||||||| |||||    
T  39221504 ttcaaattccttctcttttgattcaaacttctttactttgcctacaagttcgttatctttcaactctaattcctt 39221430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 92 - 158
Target Start/End: Original strand, 39389707 - 39389773
Alignment:
Q  92 tgcttctttttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctcct 158  Q
    |||||||||||||||| |||||||||| |||||  |||||||||  |||| ||||||||||||||||    
T  39389707 tgcttctttttagattccagctccttcgcttgaccttcaaattccttctcctttgattcatgctcct 39389773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 205
Target Start/End: Original strand, 39192590 - 39192703
Alignment:
Q  92 tgcttctttttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttcactcggccttcaaagtcatcctctttagatt 191  Q
    ||||||||| ||||||  || |||||||||||   ||| ||||||||||||||||||||| ||||||||||| || |||||   |  | |||||| || |    
T  39192590 tgcttctttctagattcaagttccttcacttggccttcgaattctctctcttttgattcacgctccttcacttggacttcatgatgcttctcttttgact 39192689  T
Q  192 caaactccttcact 205  Q
    ||||||||||||||    
T  39192690 caaactccttcact 39192703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 205
Target Start/End: Original strand, 39198270 - 39198383
Alignment:
Q  92 tgcttctttttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttcactcggccttcaaagtcatcctctttagatt 191  Q
    ||||||||| ||||||  || |||||||||||   ||| ||||||||||||||||||||| ||||||||||| || |||||   |  | |||||| || |    
T  39198270 tgcttctttctagattcaagttccttcacttggccttcgaattctctctcttttgattcacgctccttcacttggacttcatgatgcttctcttttgact 39198369  T
Q  192 caaactccttcact 205  Q
    ||||||||||||||    
T  39198370 caaactccttcact 39198383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 161
Target Start/End: Complemental strand, 38793082 - 38792998
Alignment:
Q  77 acttggctttcaacctgcttctttttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttca 161  Q
    |||||||| ||||  |||||||| |||||||  |||||||||||||||  ||||||||||| ||  ||||| |||||||||||||    
T  38793082 acttggctgtcaaagtgcttcttcttagattctagctccttcacttgaccttcaaattctcgcttctttgagtcatgctccttca 38792998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 172
Target Start/End: Complemental strand, 38793332 - 38793240
Alignment:
Q  80 tggctttcaacctgcttctttttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttcactcggccttca 172  Q
    ||||||||||  ||| |||||||||| | |||||||| ||||| |  ||||||||||||  ||||| |||||||||||||||| || ||||||    
T  38793332 tggctttcaaaatgcatctttttagactccagctcctccactttaccttcaaattctctagcttttaattcatgctccttcacccgaccttca 38793240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 226
Target Start/End: Complemental strand, 39458978 - 39458906
Alignment:
Q  154 ctccttcactcggccttcaaagtcatcctctttagattcaaactccttcactcggccataaaatttcttctct 226  Q
    ||||||||| ||||||||||| ||||||||||| ||||||| ||||||  |||| |||| || ||||||||||    
T  39458978 ctccttcacccggccttcaaattcatcctcttttgattcaatctcctttgctcgaccatcaattttcttctct 39458906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 39192680 - 39192743
Alignment:
Q  56 tcttttgactctaactccttaacttggctttcaacctgcttctttttagattgcagctccttca 119  Q
    ||||||||||| |||||||| ||||||| |||||   ||||||||||||||| |||||||||||    
T  39192680 tcttttgactcaaactccttcacttggcattcaaatagcttctttttagattccagctccttca 39192743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 39198360 - 39198423
Alignment:
Q  56 tcttttgactctaactccttaacttggctttcaacctgcttctttttagattgcagctccttca 119  Q
    ||||||||||| |||||||| ||||||| |||||   ||||||||||||||| |||||||||||    
T  39198360 tcttttgactcaaactccttcacttggcattcaaatagcttctttttagattccagctccttca 39198423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 204
Target Start/End: Complemental strand, 39221229 - 39221163
Alignment:
Q  138 tctcttttgattcatgctccttcactcggccttcaaagtcatcctctttagattcaaactccttcac 204  Q
    |||| ||||||||||||||||||| ||| |||||||| || | || ||| |||||||||||||||||    
T  39221229 tctcctttgattcatgctccttcaatcgaccttcaaattccttctgttttgattcaaactccttcac 39221163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 39221756 - 39221711
Alignment:
Q  127 ttcaaattctctctcttttgattcatgctccttcactcggccttca 172  Q
    |||||||||||||||||||||| ||||||||||||| | |||||||    
T  39221756 ttcaaattctctctcttttgatccatgctccttcacccagccttca 39221711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 172
Target Start/End: Complemental strand, 38792531 - 38792476
Alignment:
Q  117 tcacttgaatttcaaattctctctcttttgattcatgctccttcactcggccttca 172  Q
    ||||||||  |||||||||||||  ||||||||||||||||||||| || ||||||    
T  38792531 tcacttgaccttcaaattctctcgtttttgattcatgctccttcacccgaccttca 38792476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 39152320 - 39152273
Alignment:
Q  165 ggccttcaaagtcatcctctttagattcaaactccttcactcggccat 212  Q
    |||||||||| ||||||||||| ||||||||| |||||||||| ||||    
T  39152320 ggccttcaaattcatcctcttttgattcaaaccccttcactcgtccat 39152273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 149
Target Start/End: Complemental strand, 39222341 - 39222238
Alignment:
Q  46 aagttggttatcttttgactctaactccttaacttggctttcaacctgcttctttttagattgcagctccttcacttgaatttcaaattctctctctttt 145  Q
    |||||| || ||||| ||||| |||||||| | ||||||||| |  |||||| ||||||||| ||||| |||| | ||   ||||||||| |||||||||    
T  39222341 aagttgcttctctttagactcaaactccttcatttggctttcgaaatgcttccttttagattccagctgcttcgcctggccttcaaattccctctctttt 39222242  T
Q  146 gatt 149  Q
    ||||    
T  39222241 gatt 39222238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 89
Target Start/End: Original strand, 39398184 - 39398227
Alignment:
Q  46 aagttggttatcttttgactctaactccttaacttggctttcaa 89  Q
    ||||||||| |||||||||||||||||||| | |||||||||||    
T  39398184 aagttggttctcttttgactctaactccttcaattggctttcaa 39398227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 167
Target Start/End: Complemental strand, 39458686 - 39458587
Alignment:
Q  68 aactccttaacttggctttcaacctgcttctttttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttcactcggc 167  Q
    |||||||  |||||||||||||    |||||||| ||||| |||||||||||| ||   |||||| ||||||| |||||| ||| ||||||||| |||||    
T  39458686 aactcctccacttggctttcaaaactcttcttttcagattccagctccttcacctgctcttcaaaatctctcttttttgactcaagctccttcattcggc 39458587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 119
Target Start/End: Complemental strand, 39468047 - 39467974
Alignment:
Q  46 aagttggttatcttttgactctaactccttaacttggctttcaacctgcttctttttagattgcagctccttca 119  Q
    ||||||||| ||||||||||| |||||||| | |||||||| ||  ||||  |||||| ||| |||||||||||    
T  39468047 aagttggttctcttttgactccaactccttcaattggctttgaatgtgctgttttttaaattccagctccttca 39467974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 226
Target Start/End: Original strand, 39487829 - 39487902
Alignment:
Q  153 gctccttcactcggccttcaaagtcatcctctttagattcaaactccttcactcggccataaaatttcttctct 226  Q
    |||||||||| ||||||||||| |||||||||||  | |  |||||||||| |||||||| || || |||||||    
T  39487829 gctccttcacccggccttcaaattcatcctcttttaactttaactccttcattcggccatcaagttgcttctct 39487902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 39451393 - 39451293
Alignment:
Q  17 tttgattcaaactcctttattttgcatataagttggttatcttttgactctaactccttaacttggctttcaacctgcttctttttagattgcagctcct 116  Q
    |||| |||||||||||| | || || || ||||||||| ||| ||||||  ||| |||| | |||||||||||  |||| ||||||| ||| ||||||||    
T  39451393 tttgtttcaaactccttcacttggcctacaagttggttttctattgactgcaacaccttcaattggctttcaaagtgctcctttttaaattccagctcct 39451294  T
Q  117 t 117  Q
    |    
T  39451293 t 39451293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 77 - 172
Target Start/End: Complemental strand, 19807362 - 19807267
Alignment:
Q  77 acttggctttcaacctgcttctttttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttcactcggccttca 172  Q
    ||||||||||||| | ||||||||||||||||| ||||| ||| |||  ||||||||||||||||||||||| ||||||||||||  |||||||||    
T  19807362 acttggctttcaaacagcttctttttagattgctgctccatcatttggctttcaaattctctctcttttgatgcatgctccttcatccggccttca 19807267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 123
Target Start/End: Complemental strand, 19807257 - 19807190
Alignment:
Q  56 tcttttgactctaactccttaacttggctttcaacctgcttctttttagattgcagctccttcacttg 123  Q
    ||||||||||| | |||||| | | || |||||| |||| |||||||||||| |||||||||||||||    
T  19807257 tcttttgactcaagctccttgattcggttttcaaactgcctctttttagattccagctccttcacttg 19807190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 173
Target Start/End: Complemental strand, 19807087 - 19807014
Alignment:
Q  100 tttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttcactcggccttcaa 173  Q
    |||||||| |||||| |||||| |   ||||||||||   |||| ||||||||||||||||| |||||||||||    
T  19807087 tttagattccagctcattcactcggccttcaaattcttgttcttctgattcatgctccttcaatcggccttcaa 19807014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 33560641 - 33560522
Alignment:
Q  1 ttcaaattccttctcctttgattcaaactcctttattttgcatataagttggttatcttttgactctaactccttaacttggctttcaacctgcttcttt 100  Q
    ||||||||||||||  ||| ||| ||||||||| | || || || ||||||  | ||||||||||| |||||||||||||| |||||||  || ||||||    
T  33560641 ttcaaattccttcttttttaatttaaactccttcagttggcctacaagttgactctcttttgactcaaactccttaacttgtctttcaaagtggttcttt 33560542  T
Q  101 ttagattgcagctccttcac 120  Q
    ||||||| ||||||||||||    
T  33560541 ttagattccagctccttcac 33560522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 33560725 - 33560624
Alignment:
Q  1 ttcaaattccttctcctttgattcaaactcctttattttgcatataagttggttatcttttgactctaactccttaacttggctttcaacctgcttcttt 100  Q
    |||||| |||||||| ||||||||||||  ||||| ||||| || ||||| |||||||||||| || |||||||| | ||||| |||||  | |||||||    
T  33560725 ttcaaactccttctcttttgattcaaacatctttactttgcctacaagttcgttatcttttgattccaactccttcagttggccttcaaattccttcttt 33560626  T
Q  101 tt 102  Q
    ||    
T  33560625 tt 33560624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 17059318 - 17059254
Alignment:
Q  98 tttttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttcac 162  Q
    |||||||||| ||||||||||||| |   ||||||||| |||||||||||||  |||||| ||||    
T  17059318 tttttagattccagctccttcactaggccttcaaattcactctcttttgatttgtgctccatcac 17059254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 207
Target Start/End: Complemental strand, 51575235 - 51575181
Alignment:
Q  153 gctccttcactcggccttcaaagtcatcctctttagattcaaactccttcactcg 207  Q
    |||||||||| ||| |||||||||   ||||||| ||||||||||||||||||||    
T  51575235 gctccttcacccggtcttcaaagttcacctcttttgattcaaactccttcactcg 51575181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 51574649 - 51574601
Alignment:
Q  156 ccttcactcggccttcaaagtcatcctctttagattcaaactccttcac 204  Q
    |||||||| || ||| |||||| |||||||| |||||||||||||||||    
T  51574649 ccttcacttggactttaaagtcctcctcttttgattcaaactccttcac 51574601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University