View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1633_low_40 (Length: 225)
Name: NF1633_low_40
Description: NF1633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1633_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 55518455 - 55518665
Alignment:
| Q |
1 |
agtttcattgatgaaactgttggaggaaacggaaggtgaaaatgagagtaatgctgctggtgcggtagttgtggaagggagtgattcggtgtgctgcgtg |
100 |
Q |
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| T |
55518455 |
agtttcgttgatgaaactgttggaggaaacggaaggtgaaaatgagagtaatgct---ggtgcggtagttgtggaagggagtgattcggtgtgctgcgtg |
55518551 |
T |
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| Q |
101 |
tgcatgggaagaaagaaaggtgcagcgttcataccgtgtggacacactttttgcagagtgtgttcaagggaactgtggttgaatcgaggaaattgtcccc |
200 |
Q |
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| T |
55518552 |
tgcatgggaagaaagaaaggtgcagcgttcataccgtgtggacacactttttgcagagtgtgttcaagggaactgtggttgaatcgaggaaattgtcccc |
55518651 |
T |
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| Q |
201 |
tttgtaatcgttct |
214 |
Q |
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|||||||||||||| |
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| T |
55518652 |
tttgtaatcgttct |
55518665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 77 - 214
Target Start/End: Original strand, 8902886 - 8903023
Alignment:
| Q |
77 |
gggagtgattcggtgtgctgcgtgtgcatgggaagaaagaaaggtgcagcgttcataccgtgtggacacactttttgcagagtgtgttcaagggaactgt |
176 |
Q |
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| T |
8902886 |
gggaatgattcagtgtgttgtgtgtgcatggggaggaataaaggtgcggcgtttattccatgtggacatactttttgcagggtttgttctagggagctgt |
8902985 |
T |
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| Q |
177 |
ggttgaatcgaggaaattgtcccctttgtaatcgttct |
214 |
Q |
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| T |
8902986 |
ggttgaatagaggctcttgtcccctttgtaatcgttct |
8903023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 209
Target Start/End: Original strand, 4176009 - 4176102
Alignment:
| Q |
116 |
aaaggtgcagcgttcataccgtgtggacacactttttgcagagtgtgttcaagggaactgtggttgaatcgaggaaattgtcccctttgtaatc |
209 |
Q |
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|||||||||||||| ||||| ||||||||||| |||||||| |||||||||| || || ||| | | | |||| |||||||| ||||| |||| |
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| T |
4176009 |
aaaggtgcagcgtttataccatgtggacacacgttttgcaggatgtgttcaagagagctttgggttagtagagggaattgtcctctttgcaatc |
4176102 |
T |
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