View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1633_low_5 (Length: 608)
Name: NF1633_low_5
Description: NF1633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1633_low_5 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 538; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 19 - 608
Target Start/End: Complemental strand, 29663039 - 29662450
Alignment:
| Q |
19 |
aacattctcaggaaaagctatagagttcgccacaacaaattaccctgctaagatcatcaatataactaatagatttgcaaaattttcaatgacaacaaag |
118 |
Q |
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| T |
29663039 |
aacattctcaggaaaagctatagagttcgccacaacaaattaccctgctaagatcatcaatataacttattgatttgcaaaattttcaatgacaacacag |
29662940 |
T |
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| Q |
119 |
gtaaaaatttacgatgataaaaaagtgaggagacgaaacaaatcctagctaagcgtctgataatccactaggataataacaatcaattcttttctgtagt |
218 |
Q |
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| T |
29662939 |
gtaaaaatttacgatgataaaaaagcaaggagacgaaacaaatcctagctaagcgtctgataatccactagcataataacaatcaattcttttctgtagt |
29662840 |
T |
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| Q |
219 |
tttacatagcggtcaacaaaaattgtgtaattaactacattgttgaaagaaacattatgcatcatgcaacttggagattcaacaaccaaacagcatgtaa |
318 |
Q |
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| T |
29662839 |
tttacatggcggtcaacaaaaattgtgtaattaactacattgttgaaagaaacattctgcgtcatgcaacttggagattcaacaaccaaacagcatgtaa |
29662740 |
T |
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| Q |
319 |
gtgttaagcaatggaatttaatctcgcattaagatatgcaaagtggatacctcacactacacaagttactcgagcgaactatcatatcaagcatgcaaaa |
418 |
Q |
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| T |
29662739 |
gtgttaagcaatggaatttaatctcgcattaagatatgcaaagtggatacctcacactacacaagttactcgagcgaactatcatatcaagcatgcaaaa |
29662640 |
T |
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| Q |
419 |
aattcgactattatgagccactcagctacaataatcacattgtattaccccaaaagcacctaaactactactctgccaattaacaaattttgagtgcttg |
518 |
Q |
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| T |
29662639 |
aattcgactattatgagccactcagctacaataatcacattgtattaccccaaaagcacctaaactactactctgacaattaaccaaatttgtgtgcttg |
29662540 |
T |
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| Q |
519 |
cccatgaattatgtctcatattctaaatccttcagaacactagctttcaggtgacggtgctctcagaaaaggatttgaatccagcctttc |
608 |
Q |
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| T |
29662539 |
cccatgaattatgtctcatattctaaatccttcagaacactagctttcaggtgacggtgctctcagaaaaggatttgaatccagcctttc |
29662450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 149 - 325
Target Start/End: Original strand, 30865268 - 30865444
Alignment:
| Q |
149 |
agacgaaacaaatcctagctaagcgtctgataatccactaggataataacaatcaattcttttctgtagttttacatagcggtcaacaaaaattgtgtaa |
248 |
Q |
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| T |
30865268 |
agacgagacaaatcctagttaagcatttgataatccactagcataatgacaatcaattcttttatgcagttttacatagcgatcaacaagaattatgtaa |
30865367 |
T |
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| Q |
249 |
ttaactacattgttgaaagaaacattatgcatcatgcaacttggagattcaacaaccaaacagcatgtaagtgttaa |
325 |
Q |
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| T |
30865368 |
ttaactgcattgttgaaagaaacattatgcatcatgcaagttggagattcaacaaccaaacaacatacaagtgttaa |
30865444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 521 - 597
Target Start/End: Complemental strand, 29623601 - 29623524
Alignment:
| Q |
521 |
catgaattatgtctcatattctaaatccttcag-aacactagctttcaggtgacggtgctctcagaaaaggatttgaa |
597 |
Q |
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| T |
29623601 |
catgaattatttctcatattcaaagtcctccgggaacacttgctgtcaggtgacggtgccctcagaaaaggatttgaa |
29623524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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