View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1633_low_6 (Length: 593)

Name: NF1633_low_6
Description: NF1633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1633_low_6
NF1633_low_6
[»] chr1 (1 HSPs)
chr1 (1-582)||(26414344-26414923)
[»] chr2 (9 HSPs)
chr2 (104-272)||(27986404-27986572)
chr2 (104-272)||(28072936-28073104)
chr2 (405-511)||(27985892-27985996)
chr2 (405-511)||(28072423-28072527)
chr2 (390-496)||(28179918-28180022)
chr2 (390-498)||(28153427-28153534)
chr2 (393-480)||(28172170-28172256)
chr2 (241-274)||(27995121-27995154)
chr2 (241-274)||(28081655-28081688)
[»] chr3 (1 HSPs)
chr3 (390-502)||(24747443-24747553)


Alignment Details
Target: chr1 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 1 - 582
Target Start/End: Original strand, 26414344 - 26414923
Alignment:
Q  1 aggaaaagctataaaaataataataaaacgataacctgtgagcattcatcattttcagttttgttcatcattttggactctagtgtagttcatgccccac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26414344 aggaaaagctataaaaataataataaaacgataacctgtgagcattcatcattttcagttttgttcatcattttggactctggtgtagttcatgccccac 26414443  T
Q  101 tggcagaacacaaccatttcttgtgaataataaaagtaattcaacgcagtgagtcgccagttctaacacagggctagaatgtataacgtagtattcaaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26414444 tggcagaacacaaccatttcttgtgaataataaaagtaattcaaagcagtgagtcaccagttctaacacagggctagaatgtataacgtagtattcaaat 26414543  T
Q  201 ttgagttatgaattgttgaaattttaatgagtcatcaaggttgaaatagatctaactcttataagtagaatggctagaaaatgaaatcatacaaatcctc 300  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26414544 ttgagttatgaattgttgaaattttaatgagccatcaaggttgaaatagatctaactcttataagtagaatggctagaaaatgaaatcatacaaatcctc 26414643  T
Q  301 ctagtggcttgcacacctcaaatctagcnnnnnnnnnnnnnngaagaatcaattctagctttttctattttcgagcaaatacacaaccaaagtagaaatt 400  Q
    ||||||||||||||||||||||||||||              ||| |||||| |||||| |||||||||||||||||||||||||||||||||| |||||    
T  26414644 ctagtggcttgcacacctcaaatctagctttttcttttttttgaaaaatcaaatctagccttttctattttcgagcaaatacacaaccaaagtaaaaatt 26414743  T
Q  401 aaatactaaaactaagctttaataagaggtaccataatatgctatagcccatataatgcacacattatttcaagtacattgtctaaccaatcacactaaa 500  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||  ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26414744 aaatactaaaactaagctttaataagaggtaccataatatgctagagccc--ataattcacacattatttcaagtacattgtctaaccaatcacactaaa 26414841  T
Q  501 tacagtactatttcaattgttattgtacataggaccatttgaattaacaaaatttggaagtaccaaacaagattgacttagt 582  Q
    || || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26414842 tatagcattatttcaattgttattgtacataggaccatttgaattaacaaaatttggaagtaccaaacaagattgacttagt 26414923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 3e-71; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 104 - 272
Target Start/End: Complemental strand, 27986572 - 27986404
Alignment:
Q  104 cagaacacaaccatttcttgtgaataataaaagtaattcaacgcagtgagtcgccagttctaacacagggctagaatgtataacgtagtattcaaatttg 203  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||| |||||||||||||||||||||    
T  27986572 cagaacacaaccatttattgtgaataataaaagtaattcaacgcagtgaatcaccagttctaacacagagctagaatggataacgtagtattcaaatttg 27986473  T
Q  204 agttatgaattgttgaaattttaatgagtcatcaaggttgaaatagatctaactcttataagtagaatg 272  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||    
T  27986472 agttatgaattgttgaaattgtaatgagtcatcaaggttgaaatagatctaacacttgtaagtagaatg 27986404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 104 - 272
Target Start/End: Complemental strand, 28073104 - 28072936
Alignment:
Q  104 cagaacacaaccatttcttgtgaataataaaagtaattcaacgcagtgagtcgccagttctaacacagggctagaatgtataacgtagtattcaaatttg 203  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||| |||||||||||||||||||||    
T  28073104 cagaacacaaccatttattgtgaataataaaagtaattcaacgcagtgaatcaccagttctaacacagagctagaatggataacgtagtattcaaatttg 28073005  T
Q  204 agttatgaattgttgaaattttaatgagtcatcaaggttgaaatagatctaactcttataagtagaatg 272  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||    
T  28073004 agttatgaattgttgaaattgtaatgagtcatcaaggttgaaatagatctaacacttgtaagtagaatg 28072936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 405 - 511
Target Start/End: Complemental strand, 27985996 - 27985892
Alignment:
Q  405 actaaaactaagctttaataagaggtaccataatatgctatagcccatataatgcacacattatttcaagtacattgtctaaccaatcacactaaataca 504  Q
    |||||||||||||||||||||||| || ||| ||||||| |||||||||  ||  | ||||||||||||||||||||||| ||||||||||||||||| |    
T  27985996 actaaaactaagctttaataagagatatcatcatatgctttagcccata--atttatacattatttcaagtacattgtctgaccaatcacactaaatata 27985899  T
Q  505 gtactat 511  Q
    | |||||    
T  27985898 gcactat 27985892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 405 - 511
Target Start/End: Complemental strand, 28072527 - 28072423
Alignment:
Q  405 actaaaactaagctttaataagaggtaccataatatgctatagcccatataatgcacacattatttcaagtacattgtctaaccaatcacactaaataca 504  Q
    |||||||||||||||||||||||| || ||| ||||||| |||||||||  ||  | ||||||||||||||||||||||| ||||||||||||||||| |    
T  28072527 actaaaactaagctttaataagagatatcatcatatgctttagcccata--atttatacattatttcaagtacattgtctgaccaatcacactaaatata 28072430  T
Q  505 gtactat 511  Q
    | |||||    
T  28072429 gcactat 28072423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 390 - 496
Target Start/End: Original strand, 28179918 - 28180022
Alignment:
Q  390 aagtagaaattaaatactaaaactaagctttaataagaggtaccataatatgctatagcccatataatgcacacattatttcaagtacattgtctaacca 489  Q
    |||| ||||| |||||||||||||||||||  ||||||  |||||| |||||| |||||||  ||||| |||||||||||||||||||||||| | ||||    
T  28179918 aagtcgaaatcaaatactaaaactaagcttcgataagaattaccatcatatgcaatagccc--ataattcacacattatttcaagtacattgtatgacca 28180015  T
Q  490 atcacac 496  Q
    |||||||    
T  28180016 atcacac 28180022  T

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Target: chr2; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 390 - 498
Target Start/End: Original strand, 28153427 - 28153534
Alignment:
Q  390 aagtagaaattaaatactaaaactaagctttaataagagg-taccataatatgctatagcccatataatgcacacattatttcaagtacattgtctaacc 488  Q
    |||||||||| ||||||||||| ||||||| |||||||   |||||| |||| ||||||||||||  || ||||||||||||| |||||||||||| |||    
T  28153427 aagtagaaatcaaatactaaaattaagcttcaataagaaactaccatcatattctatagcccata--attcacacattatttctagtacattgtctgacc 28153524  T
Q  489 aatcacacta 498  Q
    ||||||||||    
T  28153525 aatcacacta 28153534  T

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Target: chr2; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 393 - 480
Target Start/End: Original strand, 28172170 - 28172256
Alignment:
Q  393 tagaaattaaatactaaaactaagctttaataagaggtaccataatatgctatagcccatataatgcacacattatttcaagtacatt 480  Q
    ||||||| |||||||||||||| ||||||||||||| | |||| |||||||||||| |  ||||| ||||||||||||||||||||||    
T  28172170 tagaaatcaaatactaaaactatgctttaataagagatgccatcatatgctatagctc-cataattcacacattatttcaagtacatt 28172256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 274
Target Start/End: Complemental strand, 27995154 - 27995121
Alignment:
Q  241 ttgaaatagatctaactcttataagtagaatggc 274  Q
    |||||| |||||||||||||||||||||||||||    
T  27995154 ttgaaacagatctaactcttataagtagaatggc 27995121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 274
Target Start/End: Complemental strand, 28081688 - 28081655
Alignment:
Q  241 ttgaaatagatctaactcttataagtagaatggc 274  Q
    |||||| |||||||||||||||||||||||||||    
T  28081688 ttgaaacagatctaactcttataagtagaatggc 28081655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 390 - 502
Target Start/End: Complemental strand, 24747553 - 24747443
Alignment:
Q  390 aagtagaaattaaatactaaaactaagctttaataagaggtaccataatatgctatagcccatataatgcacacattatttcaagtacattgtctaacca 489  Q
    |||||||||| |||||||||||||||||||| ||||||| || ||| ||||||||||||||  ||||| |||||||||||||||||||||||||  ||||    
T  24747553 aagtagaaatcaaatactaaaactaagctttgataagagatatcatcatatgctatagccc--ataattcacacattatttcaagtacattgtcggacca 24747456  T
Q  490 atcacactaaata 502  Q
    |||||||||||||    
T  24747455 atcacactaaata 24747443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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