View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1633_low_8 (Length: 546)
Name: NF1633_low_8
Description: NF1633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1633_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Original strand, 11183038 - 11183531
Alignment:
| Q |
1 |
tgaataaaaatcaagttttgatgagtacaatagaagatttgaatctagaataggggacaagatttgaacctagtccttgtatatactccacgaaaataat |
100 |
Q |
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| T |
11183038 |
tgaataaaaatcaagttttgatgagtacgatagaagatttgaatctagaataggggacaagatttgaacctagtcc-------------acgaaaataat |
11183124 |
T |
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| Q |
101 |
aacatttctgacacaaccccgtgaatgcacaaa---agaaaagaacaagaaagtaaaaactgatgatatctcatctaagagttactacaagaaatgaaag |
197 |
Q |
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| T |
11183125 |
aacatttctgacacaaccccgtgaatgcacaaataaagaaaagaacaagaaagtaaaaactgatgatatctcatctaagagttacaagaa-atatgaaag |
11183223 |
T |
|
| Q |
198 |
atacttagttttattaatatgatgacatataattatcaatagccatagattacaaaaatagatcttacaaacacactgcattcaatagccatatattaca |
297 |
Q |
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| T |
11183224 |
atacttagttttattaatatgatgacatataattatcaatagccatagattacaaaa-tagatcttacaaacacactgcattca---------------- |
11183306 |
T |
|
| Q |
298 |
aaatatatcaccatatccagcacaagagaagggcccatgtatgttcccctagaacacactctttattataggtacgtaggtacctttcttatgcaacttg |
397 |
Q |
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| T |
11183307 |
----atttcaccat--ccagcacaagagaagagcccatgtatgttcccctagaacacactctttattataggtaggtaggtacctttcttatgcaacttg |
11183400 |
T |
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| Q |
398 |
tattaaattacttggtatgagctaacaataccatcttctgatgaatctttggtgactttggtagcaagactaacagtattaacaaagttacagtgtgttc |
497 |
Q |
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| T |
11183401 |
tattaaattacttggtatgagctaacaataccatcttctgctgaatctttggtgactttggtagcaagactaacagtattaacaaagttacagtgtgttc |
11183500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 373 - 528
Target Start/End: Original strand, 11190600 - 11190755
Alignment:
| Q |
373 |
gtaggtacctttcttatgcaacttgtattaaattacttggtatgagctaacaataccatcttctgatgaatctttggtgactttggtagcaagactaaca |
472 |
Q |
| |
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|||| ||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11190600 |
gtagatacctttcttatgcaacttgtcttaaattacttagaatgagctaacaataccatcttctgatgaatctttggtgactttggtagcaagactaaca |
11190699 |
T |
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| Q |
473 |
gtattaacaaagttacagtgtgttctaacttcaccttgagttccagttaacactcc |
528 |
Q |
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| T |
11190700 |
gtattaacaaagttacagtgtgttctaacttcaccttgagttccagttaacactcc |
11190755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 374 - 526
Target Start/End: Complemental strand, 11173185 - 11173030
Alignment:
| Q |
374 |
taggtacctttcttatgcaacttgtattaaattacttggtatgagctaacaataccatcttctgatgaatctttggtgactttggtagcaagactaacag |
473 |
Q |
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| T |
11173185 |
taggtacctttcttatgcaacttgtattaaattacttagtatgagctaacaataccatcctctgacgactctcttgtgacttttgtggcaaggccagaat |
11173086 |
T |
|
| Q |
474 |
t---attaacaaagttacagtgtgttctaacttcaccttgagttccagttaacact |
526 |
Q |
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| T |
11173085 |
ttccattaacaaagttacattgttttctaatttcaccttgagatccagttaacact |
11173030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 253 - 302
Target Start/End: Original strand, 11190478 - 11190527
Alignment:
| Q |
253 |
aaatagatcttacaaacacactgcattcaatagccatatattacaaaata |
302 |
Q |
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| T |
11190478 |
aaatagaacttacaaacacactgcattcagtagccatagattacaaaata |
11190527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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