View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16340_high_1 (Length: 621)
Name: NF16340_high_1
Description: NF16340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16340_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 65 - 451
Target Start/End: Complemental strand, 36171230 - 36170857
Alignment:
| Q |
65 |
acaaagaacttgttcatgtgcaaagtctatgaagaggatagttatattgaatataaattacagattataacttgaaacaagatcaaatatttacaatttt |
164 |
Q |
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| T |
36171230 |
acaaagaacttgttcatgtgcaaagtctatgaagaggata-------------taaattacagattataacttgaaacaagatcaactatttacaatttt |
36171144 |
T |
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| Q |
165 |
aacaggaaggtgctaatcatagtaacaacattgtttgtctgatttattacacaaacttgattggctcatgcataaccatacctgtcgaaacgctttgata |
264 |
Q |
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| T |
36171143 |
aacaggaaggtgctaatcatagtaacaacattgtttgtctgatttattacacaaacttgattggctcatgcataaccatacctgtcgaaacgctttgata |
36171044 |
T |
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| Q |
265 |
atgatatcatggaattcattggaattcaaactcaaataacacgctaataactcttccatttcttctggctgactgatatgtttctctttgatcatctcaa |
364 |
Q |
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| T |
36171043 |
atgatatcatggaattcattggaattcaaactcaaataacacgctaataactcttccatttcttctggctgactgatatgtttctctttgatcatctcaa |
36170944 |
T |
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| Q |
365 |
tcattgaatctctaaaatcttgttgtggatccaaagaacacttgacaacagcaaaactatctaacccttcgtctgtttcctccacaa |
451 |
Q |
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| T |
36170943 |
tcattgaatctctaaaatcttgttgtggatccaaagaacacttgacaacagcaaaactatctaacccttcgtctgtttcctccacaa |
36170857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 522 - 621
Target Start/End: Complemental strand, 36170786 - 36170687
Alignment:
| Q |
522 |
aaccttagtaaccatctttggagaatgtactcttaccttggaactctgctttggtttcctcctctgcagctctctgctcacatgaactgattccctcctt |
621 |
Q |
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| T |
36170786 |
aaccttagtagccatctttggagaatgtactcttaccttggaactctgctttggtttcctcctctgcagctctctgctcacatgaactgattccctcctt |
36170687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 36171298 - 36171256
Alignment:
| Q |
18 |
actacgagcatcctaattttaacaccataaccatccataattt |
60 |
Q |
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| T |
36171298 |
actacgagcatcctaatttcaacaccataaccatccataattt |
36171256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 238 - 428
Target Start/End: Complemental strand, 5294988 - 5294798
Alignment:
| Q |
238 |
aaccatacctgtcgaaacgctttgataatgatatcatggaattcattggaattcaaactcaaataacacgctaataactcttccatttcttctggctgac |
337 |
Q |
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| T |
5294988 |
aaccatacctgcctaaatactttgattatgagatcatgatactcatcagcattcaaagtcaaataacatgccaacaactcttccatttcttctgccttac |
5294889 |
T |
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| Q |
338 |
tgatatgtttctctttgatcatctcaatcattgaatctctaaaatcttgttgtggatccaaagaacacttgacaacagcaaaactatctaa |
428 |
Q |
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| T |
5294888 |
taatctgtttctcttcaatcatctcaatcattgaatctctaaaatcctgctttggatttgatgaacatttaatcacagcaaaactatctaa |
5294798 |
T |
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