View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16340_low_3 (Length: 541)
Name: NF16340_low_3
Description: NF16340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16340_low_3 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] scaffold0689 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 12 - 541
Target Start/End: Original strand, 9230844 - 9231373
Alignment:
| Q |
12 |
atcatcaaagatttgacttcttcgaactctgtctgtaactcattagagaatcgagaaacaaagacaagatgtgtctgaacgagatatccggtaacaagaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9230844 |
atcatcaaagatttgacttcttcgaactctgtctgtaactcattagagaatcgagaaacaaagacaagatgtgtctgaacgagatatccggtaacaagaa |
9230943 |
T |
|
| Q |
112 |
gaaggataaggattaaaacgaagaactccctcagatgggtcgatatcaatggtgactcattttctaaaatatcttcgcacacgtgcacaagaaaattgtg |
211 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9230944 |
gaaggataaggtttaaaacgaagaactccctcagatgggtcgatatcaatggtgactcattttccaaaatatcttcgcacacgtgcacaagaaaattgtg |
9231043 |
T |
|
| Q |
212 |
tcgacacttactcgaaatctcacttataggattccgtggtgaaagacacaatttttcccgaagaattcgcttggatccatccctaatatcatgaaaaatg |
311 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9231044 |
tcgacacttactcaaaatctcacgtataggattccgtggtgaaagacacaatttttcccgaagaattcgcttggatccatccctaatatcatgaaaaatg |
9231143 |
T |
|
| Q |
312 |
gatacaaattgttgaaatttaggactcctacgtagtatcaccaataggtctaaaaaagtatctaaaaatattaaatttagacattcatgtcctgtccggg |
411 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
9231144 |
gatacaaattgtagaaatttaggactcctacgtagtatcgccaataggtctaaaaaagtatctaaaaatattaaatttagatattcatgtcctgtccggg |
9231243 |
T |
|
| Q |
412 |
taaataacaattgtattatatatggttggaattgcttcaattttgagagagttgaaaaaacactatttctttgatagtttctatacagtggtcttttttc |
511 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||| |
|
|
| T |
9231244 |
taagtaacaattgtattatatatggttggaattgcttcaattttgagagagttgaaaaaacactatttctttgatagtttctatacatcggccctttttc |
9231343 |
T |
|
| Q |
512 |
aaagcattttgttaaacaaggactgtgttt |
541 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
9231344 |
aaagcattttgttaaacaaggactgtgttt |
9231373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 482; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 12 - 541
Target Start/End: Complemental strand, 18351744 - 18351215
Alignment:
| Q |
12 |
atcatcaaagatttgacttcttcgaactctgtctgtaactcattagagaatcgagaaacaaagacaagatgtgtctgaacgagatatccggtaacaagaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18351744 |
atcatcaaagatttgacttcttcgaactctgtctgtaactcattagagaatcgagaaacaaagacaagatgtgtctgaacgagatatccggtaacaagaa |
18351645 |
T |
|
| Q |
112 |
gaaggataaggattaaaacgaagaactccctcagatgggtcgatatcaatggtgactcattttctaaaatatcttcgcacacgtgcacaagaaaattgtg |
211 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
18351644 |
gaaggataaggtttaaaacgaagaactccctcagatgggtcgatatcaatggtgactcattttccaaaatatcttcgcacacgtgcacaagaaaattgtg |
18351545 |
T |
|
| Q |
212 |
tcgacacttactcgaaatctcacttataggattccgtggtgaaagacacaatttttcccgaagaattcgcttggatccatccctaatatcatgaaaaatg |
311 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18351544 |
tcgacacttactcaaaatctcacgtataggattccgtggtgaaagacacaatttttcccgaagaattcgcttggatccatccctaatatcatgaaaaatg |
18351445 |
T |
|
| Q |
312 |
gatacaaattgttgaaatttaggactcctacgtagtatcaccaataggtctaaaaaagtatctaaaaatattaaatttagacattcatgtcctgtccggg |
411 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18351444 |
gatacaaattgtagaaatttaggactcctacgtagtatcgccaataggtctaaaaaagtatctaaaaatattaaatttagatattcatgtcctgtccggg |
18351345 |
T |
|
| Q |
412 |
taaataacaattgtattatatatggttggaattgcttcaattttgagagagttgaaaaaacactatttctttgatagtttctatacagtggtcttttttc |
511 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||| |
|
|
| T |
18351344 |
taagtaacaattgtattatatatggttggaattgcttcaattttgagagagttgaaaaaacactatttctttgatagtttctatacatcggccctttttc |
18351245 |
T |
|
| Q |
512 |
aaagcattttgttaaacaaggactgtgttt |
541 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
18351244 |
aaagcattttgttaaacaaggactgtgttt |
18351215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 192 - 541
Target Start/End: Complemental strand, 16902904 - 16902555
Alignment:
| Q |
192 |
acgtgcacaagaaaattgtgtcgacacttactcgaaatctcacttataggattccgtggtgaaagacacaatttttcccgaagaattcgcttggatccat |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16902904 |
acgtgcacaagaaaattgtgtcgacacttacacgaaatctcacttataggattccgtggtgaaagacacaatttttcccgaagaattcgcttggatccat |
16902805 |
T |
|
| Q |
292 |
ccctaatatcatgaaaaatggatacaaattgttgaaatttaggactcctacgtagtatcaccaataggtctaaaaaagtatctaaaaatattaaatttag |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16902804 |
ccctaatatcatgaaaaatggatacaaattgttgaaatttaggactcctacgtagtatcgccaataggtctaaaaaagtatctaaaaatattaaatttag |
16902705 |
T |
|
| Q |
392 |
acattcatgtcctgtccgggtaaataacaattgtattatatatggttggaattgcttcaattttgagagagttgaaaaaacactatttctttgatagttt |
491 |
Q |
| |
|
| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16902704 |
atattcatgtcctgtccgggtaagtaacaattgtattatatatggttggaattgcttcaattttgagagagttgaaaaaacactatttctttgatagttt |
16902605 |
T |
|
| Q |
492 |
ctatacagtggtcttttttcaaagcattttgttaaacaaggactgtgttt |
541 |
Q |
| |
|
||||||| || | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
16902604 |
ctatacatcggccctttttcaaagcattttgttaaacaaggactgtgttt |
16902555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 12 - 476
Target Start/End: Complemental strand, 2915168 - 2914706
Alignment:
| Q |
12 |
atcatcaaagatttgacttcttcgaactctgtctgtaactcattagagaatcgagaaacaaagacaagatgtgtctgaacgagatatccggtaacaagaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||| |
|
|
| T |
2915168 |
atcatcaaagatttgacttcttcgaactctgtctgtaactcattagagaatcgagaaacaaagaaaagatgtg-ctgaacgagatatccgataacaagaa |
2915070 |
T |
|
| Q |
112 |
gaaggataaggattaaaacgaagaactccctcagatgggtcgatatcaatggtgactcattttctaaaatatcttcgcacacgtgcacaagaaaattgtg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2915069 |
gaaggataaggattaaaacgaagaactccctcagatgggttggtatca-tggtgactcattttccaaaatatcttcgcacacgtgcacaagaaaattgtg |
2914971 |
T |
|
| Q |
212 |
tcgacacttactcgaaatctcacttataggattccgtggtgaaagacacaatttttcccgaagaattcgcttggatccatccctaatatcatgaaaaatg |
311 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2914970 |
tagacacttactcaaaatctcacttataggattccgtggtgaaagacacaattttttccgaagaattcgcttggatccatccctaatatcatgaaaaatg |
2914871 |
T |
|
| Q |
312 |
gatacaaattgttgaaatttaggactcctacgtagtatcaccaataggtctaaaaaagtatctaaaaatattaaatttagacattcatgtcctgtccggg |
411 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||| |
|
|
| T |
2914870 |
gatacaaattgttgaaatttaggactcccacgtagtattgccaataggtctaaaaaagtatctaacaatattaaatttagatattcatgtcttgtccggg |
2914771 |
T |
|
| Q |
412 |
taaataacaattgtattatatatggttggaattgcttcaattttgagagagttgaaaaaacacta |
476 |
Q |
| |
|
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2914770 |
taagtaacaattgtattatatatggttgaaattgcttcaattttgagagagttgaaaaaacacta |
2914706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 166 - 536
Target Start/End: Complemental strand, 40808404 - 40808034
Alignment:
| Q |
166 |
actcattttctaaaatatcttcgcacacgtgcacaagaaaattgtgtcgacacttactcgaaatctcacttataggattccgtggtgaaagacacaattt |
265 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
40808404 |
actcattttccaaaatatcttcgcacacgtgcacaagaaaattgtgtcgacacttactcgaaatctcacttgtaggattccgtggtgaaagacacaattt |
40808305 |
T |
|
| Q |
266 |
ttcccgaagaattcgcttggatccatccctaatatcatgaaaaatggatacaaattgttgaaatttaggactcctacgtagtatcaccaataggtctaaa |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
40808304 |
ttcccgaagaattcgcttggatccatccctaatatcatgaaaaatggatacaaattgttgaaatttaggactcctacgtagtatcgccaataggtctaaa |
40808205 |
T |
|
| Q |
366 |
aaagtatctaaaaatattaaatttagacattcatgtcctgtccgggtaaataacaattgtattatatatggttggaattgcttcaattttgagagagttg |
465 |
Q |
| |
|
| ||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40808204 |
agagtatctaaaaatattaaatttagatattcatgtcctgtccggataagtaacaattgtattatatatggttggaattgcttcaattttgagagagttg |
40808105 |
T |
|
| Q |
466 |
aaaaaacactatttctttgatagtttctatacagtggtcttttttcaaagcattttgttaaacaaggactg |
536 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||| |
|
|
| T |
40808104 |
aaaaaacactatttctttgatagtttctatacatcggccctttttcaaagcattttgttaaacaaggactg |
40808034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 476 - 530
Target Start/End: Complemental strand, 2914423 - 2914369
Alignment:
| Q |
476 |
atttctttgatagtttctatacagtggtcttttttcaaagcattttgttaaacaa |
530 |
Q |
| |
|
||||||||||||||||||||||| || | ||||||||||||||||||||||||| |
|
|
| T |
2914423 |
atttctttgatagtttctatacatcggccctttttcaaagcattttgttaaacaa |
2914369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 77 - 117
Target Start/End: Complemental strand, 21584900 - 21584860
Alignment:
| Q |
77 |
aagatgtgtctgaacgagatatccggtaacaagaagaagga |
117 |
Q |
| |
|
||||| ||| |||||||||||||| |||||||||||||||| |
|
|
| T |
21584900 |
aagatatgtatgaacgagatatccagtaacaagaagaagga |
21584860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 12 - 495
Target Start/End: Original strand, 7999283 - 7999766
Alignment:
| Q |
12 |
atcatcaaagatttgacttcttcgaactctgtctgtaactcattagagaatcgagaaacaaagacaagatgtgtctgaacgagatatccggtaacaagaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
7999283 |
atcatcaaagatttgacttcttcgaactctttctgtaactcattagagaatcaagaaacaaagaaaagatttgtctaaacgagatatccggtaacaagaa |
7999382 |
T |
|
| Q |
112 |
gaaggataaggattaaaacgaagaactccctcagatgggtcgatatcaatggtgactcattttctaaaatatcttcgcacacgtgcacaagaaaattgtg |
211 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||| |||||||||| || |
|
|
| T |
7999383 |
gaaggataaggactaaaacgaagaactccctcagatgggtagatatcaatggtgactcatttttcaaaatatcttcgcacacatgctcaagaaaattatg |
7999482 |
T |
|
| Q |
212 |
tcgacacttactcgaaatctcacttataggattccgtggtgaaagacacaatttttcccgaagaattcgcttggatccatccctaatatcatgaaaaatg |
311 |
Q |
| |
|
| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7999483 |
taaacacttactcaaaatctcacttataggattctgtggtgaaagacacaatttttcccgaagaattcgcttggatccatctctaatatcatgaaaaatg |
7999582 |
T |
|
| Q |
312 |
gatacaaattgttgaaatttaggactcctacgtagtatcaccaataggtctaaaaaagtatctaaaaatattaaatttagacattcatgtcctgtccggg |
411 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
7999583 |
gacacaaattgttgaaatttaggactcctacgtagtatcgtcaataggtctaaaaaagtatctaaaaatattaaatttagatatttatgtcctgtccggg |
7999682 |
T |
|
| Q |
412 |
taaataacaattgtattatatatggttggaattgcttcaattttgagagagttgaaaaaacactatttctttgatagtttctat |
495 |
Q |
| |
|
||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7999683 |
taagtaacaattgtattatatatggttgaaattacttcaattttgagagagttgaaaaaacactatttctttgatagtttctat |
7999766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 184; Significance: 2e-99; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 169 - 392
Target Start/End: Complemental strand, 30242372 - 30242150
Alignment:
| Q |
169 |
cattttctaaaatatcttcgcacacgtgcacaagaaaattgtgtcgacacttactcgaaatctcacttataggattccgtggtgaaagacacaatttttc |
268 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30242372 |
cattttccaaaatatattcgcacacgtgcacaagaaaattgtgtcgacacttactcgaaatctcacttataggattccgtagtgaaagacacaatttttt |
30242273 |
T |
|
| Q |
269 |
ccgaagaattcgcttggatccatccctaatatcatgaaaaatggatacaaattgttgaaatttaggactcctacgtagtatcaccaataggtctaaaaaa |
368 |
Q |
| |
|
|| |||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30242272 |
ccaaagaattcgcttggattcatccctaatatcatgaaaaat-gatacaaattgttaaaatttaggactcctacgtagtatcgccaataggtctaaaaaa |
30242174 |
T |
|
| Q |
369 |
gtatctaaaaatattaaatttaga |
392 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
30242173 |
gtatctaaaaatattaaatttaga |
30242150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 461 - 541
Target Start/End: Original strand, 18492777 - 18492857
Alignment:
| Q |
461 |
agttgaaaaaacactatttctttgatagtttctatacagtggtcttttttcaaagcattttgttaaacaaggactgtgttt |
541 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
18492777 |
agttgaaaaaacactatttctttgatagtttctatacatcggccctttttcaaagcattttgttaaacaaggaccgtgttt |
18492857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 506 - 541
Target Start/End: Complemental strand, 6488877 - 6488842
Alignment:
| Q |
506 |
tttttcaaagcattttgttaaacaaggactgtgttt |
541 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6488877 |
tttttcaaagcattttgttaaacaaggactatgttt |
6488842 |
T |
|
Back To:
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Target: scaffold0689 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: scaffold0689
Description:
Target: scaffold0689; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 12 - 392
Target Start/End: Complemental strand, 2156 - 1761
Alignment:
| Q |
12 |
atcatcaaagatttgacttcttcgaactctgtctgtaactcattagagaatcgagaaacaaagacaagatgtgtctgaacgagatatccggtaacaagaa |
111 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||| || || ||| |||||||||| ||||||||| ||||||||||||| | |||||||| |
|
|
| T |
2156 |
atcatcaaagatttgaccttttcgaactctgtctgtaactcactataggctcgggaaacaaagagaagatgtgtacgaacgagatatccagcaacaagaa |
2057 |
T |
|
| Q |
112 |
gaaggataaggattaaaacgaagaactcc---------------ctcagatgggtcgatatcaatggtgactcat--tttc--taaa--atatcttcgca |
190 |
Q |
| |
|
|||||| ||||||| || || ||||||| |||||||| |||||||||||||||||||||| |||| | || || |||||| | |
|
|
| T |
2056 |
gaaggaaaaggattgaatagaggaactcctgaacatttggcgatctcagatgtgtcgatatcaatggtgactcattatttcgatgaatcatttcttcgga |
1957 |
T |
|
| Q |
191 |
cacgtgcacaagaaaattgtgtcgacacttactcgaaatctcacttataggattccgtggtgaaagacacaatttttcccgaagaattcgc--------- |
281 |
Q |
| |
|
|| ||||||||| ||| |||||||||||||||||||||||| |||||| | ||| |||||||||||||| | ||||||||||| |
|
|
| T |
1956 |
------cagaagaaaattatgtaaacacttactcgaaatctcacttatcagattccattgtggaagacacaattttttctgaagaattcgccatgatata |
1863 |
T |
|
| Q |
282 |
ttggatccatccctaatatcatgaaaaatggatacaaattgttgaaatttaggactcctacgtagtatcaccaataggtctaaaaaagtatctaaaaata |
381 |
Q |
| |
|
| ||||||| | ||||||||||||||||||||||||||| || |||| |||| ||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
1862 |
tctgatccatgcataatatcatgaaaaatggatacaaattttt---------gactgctacttagtatcggcaataggtctgaaaaagtatctaaaaata |
1772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0689; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 498
Target Start/End: Complemental strand, 1727 - 1658
Alignment:
| Q |
429 |
atatatggttggaattgcttcaattttgagagagttgaaaaaacactatttctttgatagtttctataca |
498 |
Q |
| |
|
||||||| ||||||| | ||| ||||||||||||||||||| |||||| || |||| || ||||||||| |
|
|
| T |
1727 |
atatatgtttggaatagattccgttttgagagagttgaaaaagcactatctcgttgaaaggttctataca |
1658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 285 - 338
Target Start/End: Original strand, 10627065 - 10627118
Alignment:
| Q |
285 |
gatccatccctaatatcatgaaaaatggatacaaattgttgaaatttaggactc |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10627065 |
gatccatccctaatatcatgaaaaatggatacaaattgttgaaatttaggactc |
10627118 |
T |
|
Back To:
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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 254 - 321
Target Start/End: Original strand, 2612073 - 2612139
Alignment:
| Q |
254 |
aagacacaatttttcccgaagaattcgcttggatccatccctaatatcatgaaaaatggatacaaatt |
321 |
Q |
| |
|
|||||||||| ||| ||||||||||| | ||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
2612073 |
aagacacaatatttttcgaagaattcgttcggatcca-ccctaatatcatgaaaaatggaaacaaatt |
2612139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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