View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16340_low_4 (Length: 444)
Name: NF16340_low_4
Description: NF16340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16340_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 24 - 439
Target Start/End: Complemental strand, 15067894 - 15067479
Alignment:
| Q |
24 |
gtcgccgtagaaccacgttcgacttacgaatgggtcagtcaccttcgctcccaaacccaatcctcctccaccttccaccaggccatctccacatacacca |
123 |
Q |
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||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15067894 |
gtcgccgcagaaccacgtttaccttccgaatgggtcagtcaccttcgctcccaaacccaatcctcctccaccttccaccaggccatctccacatacacca |
15067795 |
T |
|
| Q |
124 |
acatggtcaccgccggcgtccctcctgacaatttcgctttccccgccgtcctcaaagcaaccgccggcatccaagaccttaacctcggcaaacaactcca |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15067794 |
acatggtcaccgccggcgtccctcctgacaatttcgctttccccgccgtcctcaaagcaaccgccggcatccaagaccttaacctcggcaaacaactcca |
15067695 |
T |
|
| Q |
224 |
tgcccatgtcttcaaattcggacaagctctccctactgctgtccctaactccctcgttaacatgtacggtaaatgcggtgatatcgacgctgcacgccgt |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15067694 |
tgcccatgtcttcaaattcggacaagctctccctactgctgtccctaactccttcgttaacatgtacggtaaatgcggtgatatcgacgctgcacgccgt |
15067595 |
T |
|
| Q |
324 |
gtgtttgatgaaataaccaaccgtgatgatgtctcatggaactccatgatcaacgcagcatgtcggtttgaggaatgggagctggcagttcatcttttcc |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15067594 |
gtgtttgatgaaataaccaaccgtgatgatgtctcatggaactccatgatcaacgcagcatgtcggtttgaggaatgggagctggcagttcatcttttcc |
15067495 |
T |
|
| Q |
424 |
ggttaatattcttgga |
439 |
Q |
| |
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||||||| || ||||| |
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| T |
15067494 |
ggttaatgttgttgga |
15067479 |
T |
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