View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16340_low_5 (Length: 333)

Name: NF16340_low_5
Description: NF16340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16340_low_5
NF16340_low_5
[»] chr8 (6 HSPs)
chr8 (1-319)||(9231648-9231966)
chr8 (1-60)||(9231408-9231467)
chr8 (1-60)||(9231468-9231527)
chr8 (1-60)||(9231528-9231587)
chr8 (1-60)||(9231588-9231647)
chr8 (3-60)||(9231350-9231407)
[»] chr4 (5 HSPs)
chr4 (1-319)||(18350800-18351118)
chr4 (1-319)||(16902202-16902520)
chr4 (3-60)||(18351181-18351238)
chr4 (1-57)||(18351124-18351180)
chr4 (3-60)||(16902521-16902578)
[»] chr2 (4 HSPs)
chr2 (1-319)||(6488489-6488807)
chr2 (1-116)||(18492892-18493007)
chr2 (3-60)||(6488808-6488865)
chr2 (3-60)||(18492834-18492891)
[»] chr5 (1 HSPs)
chr5 (1-319)||(2914006-2914324)
[»] chr3 (3 HSPs)
chr3 (34-319)||(17649955-17650239)
chr3 (1-267)||(20635461-20635723)
chr3 (31-60)||(20635431-20635460)
[»] scaffold0689 (1 HSPs)
scaffold0689 (224-319)||(1001-1096)


Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 9231648 - 9231966
Alignment:
Q  1 tcttttgttaaacaaggactgtgnnnnnnnctcttttcggatcgtaaatatttctcagaaaaatctttctcagaatattgagtatgaatccaatatcgat 100  Q
    |||||||||||||||||||||||       |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9231648 tcttttgttaaacaaggactgtgtttttttctcttttcggatagtaaatatttcccagaaaaatctttctcagaatattgagtatgaatccaatatcgat 9231747  T
Q  101 tataaaacaaatacatcatctgtgactttaatttgagatactcatggttcttcccttctgaatcatccattgcagtaagaacatacttaagaaaatcata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  9231748 tataaaacaaatacatcatctgtgactttaatttgagatactcatggttcttcccttctgaatcatcaattccagtaagaacatacttaagaaaatcata 9231847  T
Q  201 attacaggaccttaccgcatattgattattaaagaattgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcagggga 300  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  9231848 attacaggaccttaccgcatattgattattaaagaatcgaagtcgatgtgcttttaaaaaagaggatatcaacgaacttctatgaaatggtttcagcgga 9231947  T
Q  301 ttccgccaattctcttgat 319  Q
    |||||||||||||||||||    
T  9231948 ttccgccaattctcttgat 9231966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 9231408 - 9231467
Alignment:
Q  1 tcttttgttaaacaaggactgtgnnnnnnnctcttttcggatcgtaaatatttctcagaa 60  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  9231408 tcttttgttaaacaaggactgtgtttttttctcttttcggatcgtaaatatttctcagaa 9231467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 9231468 - 9231527
Alignment:
Q  1 tcttttgttaaacaaggactgtgnnnnnnnctcttttcggatcgtaaatatttctcagaa 60  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  9231468 tcttttgttaaacaaggactgtgtttttttctcttttcggatcgtaaatatttctcagaa 9231527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 9231528 - 9231587
Alignment:
Q  1 tcttttgttaaacaaggactgtgnnnnnnnctcttttcggatcgtaaatatttctcagaa 60  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  9231528 tcttttgttaaacaaggactgtgtttttttctcttttcggatcgtaaatatttctcagaa 9231587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 9231588 - 9231647
Alignment:
Q  1 tcttttgttaaacaaggactgtgnnnnnnnctcttttcggatcgtaaatatttctcagaa 60  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  9231588 tcttttgttaaacaaggactgtgtttttttctcttttcggatcgtaaatatttctcagaa 9231647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 9231350 - 9231407
Alignment:
Q  3 ttttgttaaacaaggactgtgnnnnnnnctcttttcggatcgtaaatatttctcagaa 60  Q
    |||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  9231350 ttttgttaaacaaggactgtgtttttttctcttttcggatcgtaaatatttctcagaa 9231407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 18351118 - 18350800
Alignment:
Q  1 tcttttgttaaacaaggactgtgnnnnnnnctcttttcggatcgtaaatatttctcagaaaaatctttctcagaatattgagtatgaatccaatatcgat 100  Q
    |||||||||||||||||||||||       |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  18351118 tcttttgttaaacaaggactgtgtttttttctcttttcggatagtaaatatttcccagaaaaatctttctcagaatattgagtatgaatccaatatcgat 18351019  T
Q  101 tataaaacaaatacatcatctgtgactttaatttgagatactcatggttcttcccttctgaatcatccattgcagtaagaacatacttaagaaaatcata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  18351018 tataaaacaaatacatcatctgtgactttaatttgagatactcatggttcttcccttctgaatcatcaattccagtaagaacatacttaagaaaatcata 18350919  T
Q  201 attacaggaccttaccgcatattgattattaaagaattgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcagggga 300  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  18350918 attacaggaccttaccgcatattgattattaaagaatcgaagtcgatgtgcttttaaaaaagaggatatcaacgaacttctatgaaatggtttcagcgga 18350819  T
Q  301 ttccgccaattctcttgat 319  Q
    |||||||||||||||||||    
T  18350818 ttccgccaattctcttgat 18350800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 16902520 - 16902202
Alignment:
Q  1 tcttttgttaaacaaggactgtgnnnnnnnctcttttcggatcgtaaatatttctcagaaaaatctttctcagaatattgagtatgaatccaatatcgat 100  Q
    |||||||||||||||||||||||       |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  16902520 tcttttgttaaacaaggactgtgtttttttctcttttcggatcgtaaatatttcccagaaaaatctttctcagaatattgagtatgaatccaatatcgat 16902421  T
Q  101 tataaaacaaatacatcatctgtgactttaatttgagatactcatggttcttcccttctgaatcatccattgcagtaagaacatacttaagaaaatcata 200  Q
    ||||||||||||||||||||||||| | |||||||||||||||  |||||| |||||||||||||||  ||  || |||||| ||||||| |||||||||    
T  16902420 tataaaacaaatacatcatctgtgagtataatttgagatactcggggttctccccttctgaatcatcacttctaggaagaacctacttaaaaaaatcata 16902321  T
Q  201 attacaggaccttaccgcatattgattattaaagaattgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcagggga 300  Q
    |||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||  ||    
T  16902320 attacaggacctcaccgcttattgattattaaagaatcgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaggtggtttcagcaga 16902221  T
Q  301 ttccgccaattctcttgat 319  Q
    |||||||||||||||||||    
T  16902220 ttccgccaattctcttgat 16902202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 18351238 - 18351181
Alignment:
Q  3 ttttgttaaacaaggactgtgnnnnnnnctcttttcggatcgtaaatatttctcagaa 60  Q
    |||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  18351238 ttttgttaaacaaggactgtgtttttttctcttttcggatcgtaaatatttctcagaa 18351181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 18351180 - 18351124
Alignment:
Q  1 tcttttgttaaacaaggactgtgnnnnnnnctcttttcggatcgtaaatatttctca 57  Q
    |||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  18351180 tcttttgttaaacaaggactgtgtttttttctcttttcggatcgtaaatatttctca 18351124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 16902578 - 16902521
Alignment:
Q  3 ttttgttaaacaaggactgtgnnnnnnnctcttttcggatcgtaaatatttctcagaa 60  Q
    |||||||||||||||||||||       ||||||| ||||||||||||||||||||||    
T  16902578 ttttgttaaacaaggactgtgtttttttctctttttggatcgtaaatatttctcagaa 16902521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 6488807 - 6488489
Alignment:
Q  1 tcttttgttaaacaaggactgtgnnnnnnnctcttttcggatcgtaaatatttctcagaaaaatctttctcagaatattgagtatgaatccaatatcgat 100  Q
    |||||||||||||||||||||||       |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  6488807 tcttttgttaaacaaggactgtgtttttttctcttttcggatcgtaaatatttcccagaaaaatctttctcagaatattgagtatgaatccaatattgat 6488708  T
Q  101 tataaaacaaatacatcatctgtgactttaatttgagatactcatggttcttcccttctgaatcatccattgcagtaagaacatacttaagaaaatcata 200  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||  |||||||||||||||||||||||||||    
T  6488707 tataaaacaaatacatcatatgtgactttaatttgagatactcatggttcttccattctgaatcatcaattctagtaagaacatacttaagaaaatcata 6488608  T
Q  201 attacaggaccttaccgcatattgattattaaagaattgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcagggga 300  Q
    | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6488607 agtacaggaccttaccgcatattgattattaaagaatcgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcagggga 6488508  T
Q  301 ttccgccaattctcttgat 319  Q
    ||||||||||| |||||||    
T  6488507 ttccgccaattttcttgat 6488489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 18492892 - 18493007
Alignment:
Q  1 tcttttgttaaacaaggactgtgnnnnnnnctcttttcggatcgtaaatatttctcagaaaaatctttctcagaatattgagtatgaatccaatatcgat 100  Q
    |||||||||||||||||||||||       |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  18492892 tcttttgttaaacaaggactgtgtttttttctcttttcggatcgtaaatatttcccagaaaaatctttctcagaatattgagtatgaatccaatatcgat 18492991  T
Q  101 tataaaacaaatacat 116  Q
    |||||||||| |||||    
T  18492992 tataaaacaattacat 18493007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 6488865 - 6488808
Alignment:
Q  3 ttttgttaaacaaggactgtgnnnnnnnctcttttcggatcgtaaatatttctcagaa 60  Q
    |||||||||||||||||| ||       ||||||||||||||||||||||||||||||    
T  6488865 ttttgttaaacaaggactatgtttttttctcttttcggatcgtaaatatttctcagaa 6488808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 18492834 - 18492891
Alignment:
Q  3 ttttgttaaacaaggactgtgnnnnnnnctcttttcggatcgtaaatatttctcagaa 60  Q
    ||||||||||||||||| |||       ||||||||||||||||||||||||||||||    
T  18492834 ttttgttaaacaaggaccgtgtttttttctcttttcggatcgtaaatatttctcagaa 18492891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 2914324 - 2914006
Alignment:
Q  1 tcttttgttaaacaaggactgtgnnnnnnnctcttttcggatcgtaaatatttctcagaaaaatctttctcagaatattgagtatgaatccaatatcgat 100  Q
    |||||||||||| ||||||||||       ||||||||||||  |||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  2914324 tcttttgttaaataaggactgtgtttttttctcttttcggattttaaatattttccagaaaaatctttctcagaatattgagtatgaatccaatatcgat 2914225  T
Q  101 tataaaacaaatacatcatctgtgactttaatttgagatactcatggttcttcccttctgaatcatccattgcagtaagaacatacttaagaaaatcata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||| |||||| |||||||||||||||||||||    
T  2914224 tataaaacaaatacatcatctgtgactttaatttgagatactcatggttcttcccttatgaatcattaattccagtaaaaacatacttaagaaaatcata 2914125  T
Q  201 attacaggaccttaccgcatattgattattaaagaattgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcagggga 300  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2914124 attacaggaccttaccgcatattgattattaaagaatcgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcagggga 2914025  T
Q  301 ttccgccaattctcttgat 319  Q
    |||||||||||||||||||    
T  2914024 ttccgccaattctcttgat 2914006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 34 - 319
Target Start/End: Original strand, 17649955 - 17650239
Alignment:
Q  34 ttttcggatcgtaaatatttctcagaaaaatctttctcagaatattgagtatgaatccaatatcgattataaaacaaatacatcatctgtgactttaatt 133  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||     
T  17649955 ttttcggatcgtaaatatttc-cagaaaaatctttctcagaatattgagtatgaatccaatatcaattataaaacaaatacatcatctgtgactttaatc 17650053  T
Q  134 tgagatactcatggttcttcccttctgaatcatccattgcagtaagaacatacttaagaaaatcataattacaggaccttaccgcatattgattattaaa 233  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  17650054 tgagatactcatggttcttcccttctgaatcatcaattccagtaagaacatacttaagaaaatcatagttacatgaccttaccgcatattgattattaaa 17650153  T
Q  234 gaattgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcaggggattccgccaattctcttgat 319  Q
    |||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17650154 gaatcgaagttgatgtgcttttagaaaagaggatatcaatgaacttctatgaaatggtttcaggggattccgccaattctcttgat 17650239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 20635461 - 20635723
Alignment:
Q  1 tcttttgttaaacaaggactgtgnnnnnnnctcttttcggatcgtaaatatttctcagaaaaatctttctcagaatattgagtatgaatccaatatcgat 100  Q
    |||||||||||||||||||||||       |||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||    
T  20635461 tcttttgttaaacaaggactgtgtttttttctcttttcggatcgtaaatatttcccagaaaaatctttctcaaaatatttagtatgaatccaatatcgat 20635560  T
Q  101 tataaaacaaatacatcatctgtgactttaatttgagatactcatggttcttcccttctgaatcatccattgcagtaagaacatacttaagaaaatcata 200  Q
    ||| ||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||    
T  20635561 tatgaaacaaatacatcatc----actttaatttgagatactcatggttcttcccttctgaatcatcaatttcagtaagaacatatttaagaaaatcata 20635656  T
Q  201 attacaggaccttaccgcatattgattattaaagaattgaagtcgatgtgcttttaaaaaagaggat 267  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  20635657 attacatgaccttaccgcatattgattattaaagaatcgaagtcgatgtgcttttaaaaaagaggat 20635723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 60
Target Start/End: Original strand, 20635431 - 20635460
Alignment:
Q  31 ctcttttcggatcgtaaatatttctcagaa 60  Q
    ||||||||||||||||||||||||||||||    
T  20635431 ctcttttcggatcgtaaatatttctcagaa 20635460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0689 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0689
Description:

Target: scaffold0689; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 224 - 319
Target Start/End: Complemental strand, 1096 - 1001
Alignment:
Q  224 gattattaaagaattgaagtcgatgtgcttttaaaaaagaggatatcaatgaacttctatgaaatggtttcaggggattccgccaattctcttgat 319  Q
    ||||||| |||||| ||||||||| ||||||  ||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||    
T  1096 gattattcaagaatcgaagtcgatttgctttataaaaagaagatatcaatgaacttctatgaaatggtttcacgggattcagccaattgtcttgat 1001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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