View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16341_high_2 (Length: 311)
Name: NF16341_high_2
Description: NF16341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16341_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 10 - 168
Target Start/End: Original strand, 41743515 - 41743673
Alignment:
| Q |
10 |
gatgaagaaccatgaccctgaagaagatcaaagtctctatcagagaaaatctgttctcgccaaagtgaaggagagggccaggaaattagtattgcgtaac |
109 |
Q |
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| T |
41743515 |
gatgaagaaccatgaccctgaagaagatcaaagtctctatcagagaaaatctgttctcgccaaagtgaaggagagggccaggaaattagtattgcgtaac |
41743614 |
T |
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| Q |
110 |
agcctcagcaggaaaagacaggacgacgataatatcactccatcttggggcgttagctt |
168 |
Q |
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| T |
41743615 |
agcctcagcaggaaaagacaggacgacgataatatcactccatcttggggcgttagctt |
41743673 |
T |
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Target: chr2; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 196 - 295
Target Start/End: Original strand, 41743704 - 41743803
Alignment:
| Q |
196 |
tgccgagtaccttggagctccaagtaaagtacacataactattaaatttctaagtaacattttaaaaaatggtcgcatctccaattgtgactgcaattat |
295 |
Q |
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| T |
41743704 |
tgccgagtaccttggagctccaagtaaagtacacataactattaaatttctaagtaacattttaaaaaatggtctcatctccaattgtgactgcaattat |
41743803 |
T |
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