View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16341_high_3 (Length: 309)
Name: NF16341_high_3
Description: NF16341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16341_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 20 - 293
Target Start/End: Original strand, 51223374 - 51223631
Alignment:
| Q |
20 |
gttaaatgtcaatatttgtcactctaaacattggaagaacttaattatcatttatttatttgaatttatgcttagttataaatacttgtgtaagtatcta |
119 |
Q |
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| T |
51223374 |
gttaaatgtcaatatttgtcactctaaacattggaagaacttaattatcatttatttatttgaatttatgcttagttataaata---------------- |
51223457 |
T |
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| Q |
120 |
tttcagcttctaaacatttcttatgattaagaaggttgaattgacaggaaatatatgttgcatacattaaattattaatattcagtgggaaacacatatg |
219 |
Q |
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| T |
51223458 |
tttcagcttctaaacatttcttatgattaagaaggttggattgacaggaaatatatgttgcatacattaaattattaatattcagtgggaaacacatatg |
51223557 |
T |
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| Q |
220 |
tatcgttgtggattgacaaattgattcttagaagctgccaattcaattctttcccatctcttttttctattcat |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51223558 |
tatcgttgtggattgacaaattgattcttagaagctgccaattcaattctttcccatctcttttttctattcat |
51223631 |
T |
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