View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16341_high_4 (Length: 281)
Name: NF16341_high_4
Description: NF16341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16341_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 262
Target Start/End: Complemental strand, 52838007 - 52837764
Alignment:
| Q |
13 |
aatatatgactttctagatgggttgcgaagctactcatatcagattcacgagagagagaaaattatcattgaaaccaaaattatgacttccattatggtg |
112 |
Q |
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| T |
52838007 |
aatatatgactttctagatgggttgcgaagctactcatatcagattcacgagagagagaaaattatcattgaaaccaaaattataa------ttatggtg |
52837914 |
T |
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| Q |
113 |
aaaatcagttcaaagattatggtgattgtgatgatagcaacaatacaaatggttgtgatatccatgccattaacattaattccatcctcatcaacggtgc |
212 |
Q |
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| T |
52837913 |
aaaatcagttcaaagattatggtgattgtgatgatagcaacaatactaatggttgtgatatccatgccattaacattaattccatcctcatcaacggtgc |
52837814 |
T |
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| Q |
213 |
agcatccagtatctattgttcggccattaagggaccatttgagccaaggt |
262 |
Q |
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| T |
52837813 |
agcatccagtatctattgttcggccattaagggaccatttgagccaaggt |
52837764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 69 - 218
Target Start/End: Original strand, 37444309 - 37444458
Alignment:
| Q |
69 |
agaaaattatcattgaaaccaaaattatgacttccattatggtgaaaatcagttcaaagattatggtgattgtgatgatagcaacaatacaaatggttgt |
168 |
Q |
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|||||||||||||| |||||||||||||||| | ||||||||||||| |||| || ||| |||||||||||| |||||| |||||| |||||||| |
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| T |
37444309 |
agaaaattatcattcaaaccaaaattatgacattagttatggtgaaaataagttgtaaaattgtggtgattgtgactatagcagcaatactaatggttga |
37444408 |
T |
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| Q |
169 |
gatatccatgccattaacattaattccatcctcatcaacggtgcagcatc |
218 |
Q |
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| T |
37444409 |
gatgtccatgccattaacattcattccatcctcatcaatggtgcaacatc |
37444458 |
T |
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