View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16341_low_1 (Length: 423)
Name: NF16341_low_1
Description: NF16341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16341_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 6 - 407
Target Start/End: Original strand, 38128261 - 38128643
Alignment:
| Q |
6 |
agaagcataggattaagttaagaagtttgaaactttccattacacatatctgttttccaaataaccagtttttgtatttatatttaagttttgatttgga |
105 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38128261 |
agaatcataggattaagttaagaagtttgaaactttccattacacatatctgttttccaaataaccagtttttgtatttatatttaagttttgatttgga |
38128360 |
T |
|
| Q |
106 |
cttgctcaaaagttcgaagtttgagctcagcttacatgcatagctaatctatacgctctattttggttctggttctgcagagctaatcttacttgtaatg |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38128361 |
cttgctcaaaagttcgaagtttgagctcagcttacatgcatagctaatctatacgctctattttggttctggttctgcagagctaatcttacttgtaatg |
38128460 |
T |
|
| Q |
206 |
aacctgttaataaaatcttcattttaggtagagtagcttaggccttatctgatagcttggtagtatttaaccaactaccctttttcgtttcattttctca |
305 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38128461 |
aacctgttaataaaatcttcattttaggtagag-------------------tagcttggtagtatttaaccaactaccctttttcgtttcattttctca |
38128541 |
T |
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| Q |
306 |
aatataaagcagatacaaatgtctctgaatcctaaaggccatgcaatcaaggcattccaggagcatgatagtcaaacagtacatgaactcctagaacagt |
405 |
Q |
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| T |
38128542 |
aacataaagcagatacaaatgtctctgaatcctaaaggccatgcaatcaaggcattccaggagcatgatagtcaaacagtacatgaactcctagaacagt |
38128641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 95 - 400
Target Start/End: Complemental strand, 45266819 - 45266507
Alignment:
| Q |
95 |
tttgatttggacttgctcaaaagttcgaagtttgagctcagcttacatgcatagctaatctatacgctctattttggttctggttctgcagagctaatct |
194 |
Q |
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|||||||| |||||||||||| | ||||||||||| | ||||| ||||||| ||||||||| ||| ||||||||||||||||||||| |||| |||| |
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| T |
45266819 |
tttgatttcaacttgctcaaaaatataaagtttgagcttaacttacctgcatagttaatctatatgctttattttggttctggttctgcatagctgatct |
45266720 |
T |
|
| Q |
195 |
tacttgtaatgaacctgttaataaaatcttcattttaggtagagtagcttaggccttatctgatagcttggtagtatttaaccaact--accctttttcg |
292 |
Q |
| |
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||||||||| ||||||| | |||| | |||||||| ||||||||||||||| |||||||||||||||||| |||||||| || | | ||||||| |
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| T |
45266719 |
agcttgtaatgcacctgttcttgaaatttgcattttagctagagtagcttaggctttatctgatagcttggtaatatttaacgaagtgcattttttttcg |
45266620 |
T |
|
| Q |
293 |
tttcattttctcaaatataaagcagatacaaatgtctctgaat-----cctaaaggccatgcaatcaaggcattccaggagcatgatagtcaaacagtac |
387 |
Q |
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||| ||||||||||| ||||||||| |||||||||| ||||| ||||||| |||||||| |||||||||||| ||||||| |||||||||||| | |
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| T |
45266619 |
tttaattttctcaaaggtaaagcagaaacaaatgtctttgaatatgaacctaaagaccatgcaaccaaggcattccaagagcatggtagtcaaacagtgc |
45266520 |
T |
|
| Q |
388 |
atgaactcctaga |
400 |
Q |
| |
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| ||||||||||| |
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|
| T |
45266519 |
acgaactcctaga |
45266507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 13090337 - 13090281
Alignment:
| Q |
11 |
cataggattaagttaagaagtttgaaactttccattacacatatctgttttccaaat |
67 |
Q |
| |
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||||||||||||||||||||||| |||||||| ||| |||||||| ||||||||||| |
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|
| T |
13090337 |
cataggattaagttaagaagtttaaaactttctattccacatatccgttttccaaat |
13090281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 18336869 - 18336928
Alignment:
| Q |
11 |
cataggattaagttaagaagtttgaaactttccattacacatatctgttttccaaataac |
70 |
Q |
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||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||| |
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| T |
18336869 |
cataggattaagttaagaagtttaaaactttctattccacatatctgttttccaaataac |
18336928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 26614505 - 26614446
Alignment:
| Q |
11 |
cataggattaagttaagaagtttgaaactttccattacacatatctgttttccaaataac |
70 |
Q |
| |
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||||||||||||||||||||||| |||||||| ||| |||||||| |||||||||||||| |
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| T |
26614505 |
cataggattaagttaagaagtttaaaactttctattccacatatccgttttccaaataac |
26614446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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