View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16341_low_10 (Length: 247)
Name: NF16341_low_10
Description: NF16341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16341_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 50832192 - 50832425
Alignment:
| Q |
1 |
aattttagaaatggattccaatgcaaattaacataatcacaactgattagcagattgaagnnnnnnnnn-aggttcaaacatttaattcattgaagaaaa |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
50832192 |
aattttagaaatggattccaatgcaaattaacataatcacaactgattagcagattgaagttttttttttaggttcaaacatttaattcattgaagaaaa |
50832291 |
T |
|
| Q |
100 |
gctggttcacagcttctaaaaagaggttacaacagtttcagttaccaaaagttcagtaggggcattccctatccaagctttaaatcctacagtcttagaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50832292 |
gctggttcacagcttctaaaaagaggttacaacagtttcagttaccaaaagttcagtaggggcattccctatccaagctttaaatcctacagtcttagaa |
50832391 |
T |
|
| Q |
200 |
agaatggccatgtcacgtgcctctacattaaaac |
233 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
50832392 |
agaatggccatgtcacgtgcctctacattaaaac |
50832425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 50843661 - 50843428
Alignment:
| Q |
1 |
aattttagaaatggattccaatgcaaattaacataatcacaactgattagcagattgaagnnnnnnnnn-aggttcaaacatttaattcattgaagaaaa |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
50843661 |
aattttagaaatggattccaatgcaaattaacataatcacaactgattagcagattgaagttttttttttaggttcaaacatttaattcattgaagaaaa |
50843562 |
T |
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| Q |
100 |
gctggttcacagcttctaaaaagaggttacaacagtttcagttaccaaaagttcagtaggggcattccctatccaagctttaaatcctacagtcttagaa |
199 |
Q |
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| T |
50843561 |
gctggttcacagcttctaaaaagaggttacaacagtttcagttaccaaaagttcagtaggggcattccctatccaagctttaaatcctacagtcttagaa |
50843462 |
T |
|
| Q |
200 |
agaatggccatgtcacgtgcctctacattaaaac |
233 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
50843461 |
agaatggccatgtcacgtgcctctacattaaaac |
50843428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 4 - 233
Target Start/End: Original strand, 32791834 - 32792048
Alignment:
| Q |
4 |
tttagaaatggattccaatgcaaattaacataatcacaactgattagcagattgaagnnnnnnnnn-aggttcaaacatttaattcattgaagaaaagct |
102 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
32791834 |
tttagaaatggattccaatgcaaattaacataatcacaactgattagcagattgaagatttttttttaggttcaaacatttaattcgttgaagaaaagct |
32791933 |
T |
|
| Q |
103 |
ggttcacagcttctaaaaagaggttacaacagtttcagttaccaaaagttcagtaggggcattccctatccaagctttaaatcctacagtcttagaaaga |
202 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32791934 |
ggttcacagcttctaaaaagaggttacaacagtt----------------cagtaggggcattccctatccaagctttaaatcctacagtcttagaaaga |
32792017 |
T |
|
| Q |
203 |
atggccatgtcacgtgcctctacattaaaac |
233 |
Q |
| |
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|||||||||||| |||||||||||||||||| |
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| T |
32792018 |
atggccatgtcatgtgcctctacattaaaac |
32792048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 24533991 - 24534224
Alignment:
| Q |
1 |
aattttagaaatggattccaatgcaaattaacataatcacaactgattagcagattgaagnnnnnnnnn-aggttcaaacatttaattcattgaagaaaa |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
24533991 |
aattttagaaatggattccaatgcaaattaacataatcacaactgattagcagattgaagttttttttttaggttcaaacatttaattcgttgaagaaaa |
24534090 |
T |
|
| Q |
100 |
gctggttcacagcttctaaaaagaggttacaacagtttcagttaccaaaagttcagtaggggcattccctatccaagctttaaatcctacagtcttagaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24534091 |
gctggttcacagcttctaaaaagaggttacaacagtttcagttaccaacagttcagtaggggcattccctatccaagctttaaatcctacagtcttagaa |
24534190 |
T |
|
| Q |
200 |
agaatggccatgtcacgtgcctctacattaaaac |
233 |
Q |
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||||| ||||||||| |||||||||||||||||| |
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|
| T |
24534191 |
agaatagccatgtcatgtgcctctacattaaaac |
24534224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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