View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16341_low_2 (Length: 390)
Name: NF16341_low_2
Description: NF16341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16341_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 385
Target Start/End: Complemental strand, 44764151 - 44763784
Alignment:
| Q |
18 |
gtaatatgatttcaatttaattattacacaccgacagtgtaaagttattttgtaaattcgtctcattttatttgcaggagaagtgtttgggctaattatt |
117 |
Q |
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| T |
44764151 |
gtaatatgatttcaatttaattattacacaccgacagtgtaaagttattttgtaaattcgtctcattttatttgcaggagaagtgtttgggctaattatt |
44764052 |
T |
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| Q |
118 |
gtttgtcattcgataacaacaagctccttaacgatgatgatgtgcttcaaaatttgggcgttcggaataattctcaggtttcttctacttacttatgcca |
217 |
Q |
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| T |
44764051 |
gtttgtcattcgataacaacaagctccttaacgatgatgatgtgcttcaaaatttgggcgttcggaataattctcaggtttcttctacttacttatgcca |
44763952 |
T |
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| Q |
218 |
ttgctggaattatgaaatagaataaattactagtattttagtctgcattgatcatgtgaccaaaagaatgtcatattcgcaatatcatttattgtattaa |
317 |
Q |
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| T |
44763951 |
ttgctggaattgtgaaatagaataaattactagtattttagtctgcattgatcatgtgaccaaaagaatgtcatattcgcaatatcatttattgtattaa |
44763852 |
T |
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| Q |
318 |
aattgctgccattaccaactacaaagtttcaaattcgtaatgccatgtatggaatgatctctgctcct |
385 |
Q |
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| T |
44763851 |
aattgctgccattaccaactacaaagtttcaaattcgtaatgccatgtatagaatggtctctgctcct |
44763784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 70 - 294
Target Start/End: Complemental strand, 28357471 - 28357247
Alignment:
| Q |
70 |
taaattcgtctcattttatttgcaggagaagtgtttgggctaattattgtttgtcattcgataacaacaagctccttaacgatgatgatgtgcttcaaaa |
169 |
Q |
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| T |
28357471 |
taaattcatctcattttatttgcaggagaagtgtttgggctaattattgtttgtcattcgataacaacaagctccttaacgatgatgatgtgcttcaaaa |
28357372 |
T |
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| Q |
170 |
tttgggcgttcggaataattctcaggtttcttctacttacttatgccattgctggaattatgaaatagaataaattactagtattttagtctgcattgat |
269 |
Q |
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| T |
28357371 |
tttgggcgttcggaataattctcaggtttcttctacttacttatgccattgctggaattgtgaaatagaataaattactagtattttagtctgcattgat |
28357272 |
T |
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| Q |
270 |
catgtgaccaaaagaatgtcatatt |
294 |
Q |
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| T |
28357271 |
catgtgaccaaaagaatgtcatatt |
28357247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 28357637 - 28357588
Alignment:
| Q |
18 |
gtaatatgatttcaatttaattattacacaccgacagtgtaaagttatttt |
68 |
Q |
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| T |
28357637 |
gtaatatgatttgaatttaattattacacaccaacagt-taaagttatttt |
28357588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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