View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16341_low_3 (Length: 377)
Name: NF16341_low_3
Description: NF16341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16341_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 19 - 364
Target Start/End: Original strand, 36903185 - 36903530
Alignment:
| Q |
19 |
ctattcatgctatcaagctttataacaagatcaaggaaatgcttaacttacttgaatgtcctaagaaatacacatttaactttgccgatcttctcaaacc |
118 |
Q |
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| T |
36903185 |
ctattcatgctatcaagctttacaacaagatcaaggaaatgcttaacttacttgaatgtcctaagaaatacacatttaactttgccgatcttctcaaacc |
36903284 |
T |
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| Q |
119 |
cgatcctcatcgaaccgagtttttccttggagctcttctcaatttctgtctcgacaggttcgttcgttactctcacttcttcaaccatttctgctaaatc |
218 |
Q |
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| T |
36903285 |
cgatcctcatcgaaccgagtttttccttggagctcttctcaatttctgtctcgacaggttcgttcgttactctcacttcttcaaccatttctgctaaatc |
36903384 |
T |
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| Q |
219 |
atcaaggaaaaataaaacataacctaattgttaaattttttaaaatcagggatgggagattgaatgcgatatcagaaatcgtagatgaattcaacgcgtt |
318 |
Q |
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| T |
36903385 |
atcaaggaaaaataaaacataacctaattgttaaattttttaaaatcagggatgggagattgaatgcgatatcagaaatcgtagacgaattcaacgcgtt |
36903484 |
T |
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| Q |
319 |
ggaacagaagatagttgatattgaagataataagattgcacaggtt |
364 |
Q |
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| T |
36903485 |
ggaacagaagatagttgagattgaagagaataatattacacaggtt |
36903530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 33 - 166
Target Start/End: Complemental strand, 36892333 - 36892200
Alignment:
| Q |
33 |
aagctttataacaagatcaaggaaatgcttaacttacttgaatgtcctaagaaatacacatttaactttgccgatcttctcaaacccgatcctcatcgaa |
132 |
Q |
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| T |
36892333 |
aagctgtacaacaagatcatagaaatgcttaatgctcttgaatgtcctcagaaatattcattcaactttgctgatcttctcaaacctgatcctcgtcgaa |
36892234 |
T |
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| Q |
133 |
ccgagtttttccttggagctcttctcaatttctg |
166 |
Q |
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| T |
36892233 |
ctgagtttttcctcggtgcacttctcagtttctg |
36892200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 29 - 182
Target Start/End: Complemental strand, 17480474 - 17480321
Alignment:
| Q |
29 |
tatcaagctttataacaagatcaaggaaatgcttaacttacttgaatgtcctaagaaatacacatttaactttgccgatcttctcaaacccgatcctcat |
128 |
Q |
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| T |
17480474 |
tatcaaggtgtataataagatcaaggaaatgcttaatactcttgaatgtcctaagaaatacacgtttaacttggctgatcttgttaagcctgatcctcat |
17480375 |
T |
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| Q |
129 |
cgaaccgagtttttccttggagctcttctcaatttctgtctcgacaggttcgtt |
182 |
Q |
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| T |
17480374 |
cgtaccgagttctttctcggtgctcttctcaatttctgtctggacaggttcgtt |
17480321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 364
Target Start/End: Complemental strand, 17479601 - 17479536
Alignment:
| Q |
299 |
gtagatgaattcaacgcgttggaacagaagatagttgatattgaagataataagattgcacaggtt |
364 |
Q |
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| T |
17479601 |
gtagatgaattcaacgccttggaacagaagatagtggagattaaggagaataagattacgcaggtt |
17479536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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