View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16341_low_6 (Length: 285)

Name: NF16341_low_6
Description: NF16341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16341_low_6
NF16341_low_6
[»] chr1 (1 HSPs)
chr1 (1-285)||(22860827-22861112)


Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 22861112 - 22860827
Alignment:
Q  1 ccatttctcatagcgaacatggagcgagcaaagattctccaactccatgaaatagatcgagttaggatcgataaagctaaaacctacatccctttcttat 100  Q
    |||||||||||| ||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  22861112 ccatttctcataacgaacatggagagagcaaagattcccaaactccatgaaatagatcgagttaggatcgataaagctaaaacttacatccctttctgat 22861013  T
Q  101 atgaattccctcaccatctcacccttgctattagataaggaactggaacaacattcgctcaaactttatggg-attctaaggttaaaagaaaggggaaag 199  Q
    | ||||||||||||| ||||||||||  |  ||||||||||||| |||||||||||||| ||||||||||||  ||||||||||||||||||||||||||    
T  22861012 acgaattccctcaccctctcacccttcttcatagataaggaactagaacaacattcgcttaaactttatgggttttctaaggttaaaagaaaggggaaag 22860913  T
Q  200 gaaatacccttagcttctcttggaaaattcaaaa-tttgaagtcattgatgcctaataagggatactgaaatgaatccgtgaaacct 285  Q
    |||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  22860912 gaaatacctttagcttctc-tggaaaattcaaaagtttgaagtcattgatgcctaataagggatacataaatgaatccgtgaaacct 22860827  T

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