View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16341_low_8 (Length: 269)
Name: NF16341_low_8
Description: NF16341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16341_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 27620055 - 27619808
Alignment:
| Q |
1 |
ttatcaatgaaggtatccctcgatcactgacaataaacacaatgttattaacattactgcagagtttgtttagcacatatacgacctcaggaccggggga |
100 |
Q |
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| T |
27620055 |
ttatcaatgaaggcatccctcgatcaatgacaataatcacagtgttattaacattactgcaaagtttgtttagcacatatacgacctcaggactggggga |
27619956 |
T |
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| Q |
101 |
tgcaacaatgggatcattaggtacaattgtaccaccatagtctaaaaatattgccctgcattttttccttttatatgcataaacaatgtagtttttagac |
200 |
Q |
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| T |
27619955 |
tgcaacaatgggatcatgaggtacaattgttacatcatagtctaaaaatattgccctgcattttttccttttatatgcataaacaatgtagtttctagac |
27619856 |
T |
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| Q |
201 |
aacttcttgaaattcggagagagggacaaaactctgacctccaggcca |
248 |
Q |
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| T |
27619855 |
agcttctttaaattcggagagagggacaaaactctgacctccaggcca |
27619808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 35229080 - 35228833
Alignment:
| Q |
1 |
ttatcaatgaaggtatccctcgatcactgacaataaacacaatgttattaacattactgcagagtttgtttagcacatatacgacctcaggaccggggga |
100 |
Q |
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|||||||||||||| |||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
35229080 |
ttatcaatgaaggtctccctcgaccactgacaataaacacagtgttattaacatcactgcagagtttgtttagcacagatacgacctcaggaccagggga |
35228981 |
T |
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| Q |
101 |
tgcaacaatgggatcattaggtacaattgtaccaccatagtctaaaaatattgccctgcattttttccttttatatgcataaacaatgtagtttttagac |
200 |
Q |
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| T |
35228980 |
tgcaacaatggaatcatgacgtacaattgtaccatcatagtctaaaaatattgccctgcattttgtccttttatatgcagaaacaacatagtttctggac |
35228881 |
T |
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| Q |
201 |
aacttcttgaaattcggagagagggacaaaactctgacctccaggcca |
248 |
Q |
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| T |
35228880 |
agcttcttgaaattcggagacagggacaaaactctgaactccaggcca |
35228833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 168 - 248
Target Start/End: Original strand, 27620194 - 27620274
Alignment:
| Q |
168 |
cttttatatgcataaacaatgtagtttttagacaacttcttgaaattcggagagagggacaaaactctgacctccaggcca |
248 |
Q |
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||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
27620194 |
cttttatatgcataaacaatgtagtttctagacagcttcttgaaattcggagagagggacaaaactctaaactccaggcca |
27620274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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