View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16341_low_9 (Length: 249)

Name: NF16341_low_9
Description: NF16341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16341_low_9
NF16341_low_9
[»] chr3 (3 HSPs)
chr3 (1-239)||(50831942-50832180)
chr3 (1-239)||(50843673-50843911)
chr3 (109-216)||(5574880-5574987)
[»] chr8 (2 HSPs)
chr8 (109-216)||(42318736-42318843)
chr8 (109-216)||(45240964-45241071)
[»] chr6 (1 HSPs)
chr6 (109-216)||(31662273-31662380)
[»] chr2 (1 HSPs)
chr2 (111-216)||(6672091-6672196)
[»] chr1 (1 HSPs)
chr1 (1-34)||(24533946-24533979)
[»] chr5 (1 HSPs)
chr5 (111-155)||(21123312-21123356)


Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 50832180 - 50831942
Alignment:
Q  1 aaggaaagggatatccatttctaataatgtgacaaagaaagctgctaaatcttattggaatcgtttaaatttgcagctaggtaaattatgagacaagcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50832180 aaggaaagggatatccatttctaataatgtgacaaagaaagctgctaaatcttattggaatcgtttaaatttgcagctaggtaaattatgagacaagcaa 50832081  T
Q  101 atgtaatttctttggactatgaaaatgcattagagagcaagaacaatgtcattttgctgccatatatttgtttttcctattgctttagtatttgtatgtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50832080 atgtaatttctttggactatgaaaatgcattagagagcaagaacaatgtcattttgctgccatatatttgtttttcctattgctttagtatttgtatgtt 50831981  T
Q  201 cacaagcttcccaatannnnnnnagtctcacagcttctt 239  Q
    ||||||||||| ||||       ||||||||||||||||    
T  50831980 cacaagcttcctaatatttttttagtctcacagcttctt 50831942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 50843673 - 50843911
Alignment:
Q  1 aaggaaagggatatccatttctaataatgtgacaaagaaagctgctaaatcttattggaatcgtttaaatttgcagctaggtaaattatgagacaagcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50843673 aaggaaagggatatccatttctaataatgtgacaaagaaagctgctaaatcttattggaatcgtttaaatttgcagctaggtaaattatgagacaagcaa 50843772  T
Q  101 atgtaatttctttggactatgaaaatgcattagagagcaagaacaatgtcattttgctgccatatatttgtttttcctattgctttagtatttgtatgtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50843773 atgtaatttctttggactatgaaaatgcattagagagcaagaacaatgtcattttgctgccatatatttgtttttcctattgctttagtatttgtatgtt 50843872  T
Q  201 cacaagcttcccaatannnnnnnagtctcacagcttctt 239  Q
    ||||||||||| ||||       ||||||||||||||||    
T  50843873 cacaagcttcctaatatttttttagtctcacagcttctt 50843911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 109 - 216
Target Start/End: Complemental strand, 5574987 - 5574880
Alignment:
Q  109 tctttggactatgaaaatgcattagagagcaagaacaatgtcattttgctgccatatatttgtttttcctattgctttagtatttgtatgttcacaagct 208  Q
    ||||||||||||||||||||||||| ||||||||  ||| | ||||| | ||||||||| ||||||| | || |||||||||||||||||||||| ||||    
T  5574987 tctttggactatgaaaatgcattagcgagcaagacaaattttattttacagccatatatatgtttttaccatagctttagtatttgtatgttcactagct 5574888  T
Q  209 tcccaata 216  Q
    ||| ||||    
T  5574887 tcctaata 5574880  T

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Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 109 - 216
Target Start/End: Original strand, 42318736 - 42318843
Alignment:
Q  109 tctttggactatgaaaatgcattagagagcaagaacaatgtcattttgctgccatatatttgtttttcctattgctttagtatttgtatgttcacaagct 208  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| || |||||||||||| ||||||||||||||    
T  42318736 tctttggactattaaaatgcattagagagcaagaccaatgtcattttgctgccatatatatgtttttcccatagctttagtatttttatgttcacaagct 42318835  T
Q  209 tcccaata 216  Q
    ||| ||||    
T  42318836 tcctaata 42318843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 109 - 216
Target Start/End: Complemental strand, 45241071 - 45240964
Alignment:
Q  109 tctttggactatgaaaatgcattagagagcaagaacaatgtcattttgctgccatatatttgtttttcctattgctttagtatttgtatgttcacaagct 208  Q
    |||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||| |||||||||  | || ||||||||| |||||||||||||     
T  45241071 tctttggactatgaaaatgcatcagagagcaacaccaatgtcattttgctgccatatatatgtttttcccgtagcattagtatttttatgttcacaagca 45240972  T
Q  209 tcccaata 216  Q
    ||| ||||    
T  45240971 tcctaata 45240964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 109 - 216
Target Start/End: Complemental strand, 31662380 - 31662273
Alignment:
Q  109 tctttggactatgaaaatgcattagagagcaagaacaatgtcattttgctgccatatatttgtttttcctattgctttagtatttgtatgttcacaagct 208  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| || |||||||||||| ||||||||||||||    
T  31662380 tctttggactattaaaatgcattagagagcaagaccaatgtcattttgctgccatatatatgtttttcccatagctttagtatttttatgttcacaagct 31662281  T
Q  209 tcccaata 216  Q
    ||| ||||    
T  31662280 tcctaata 31662273  T

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Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 111 - 216
Target Start/End: Original strand, 6672091 - 6672196
Alignment:
Q  111 tttggactatgaaaatgcattagagagcaagaacaatgtcattttgctgccatatatttgtttttcctattgctttagtatttgtatgttcacaagcttc 210  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||| || |||||||||||| ||||||||||||| ||    
T  6672091 tttggactatgaaaatgcattagagagcaacaccaatgtcattttgctgccatatatatgtttttcccatagctttagtatttttatgttcacaagcatc 6672190  T
Q  211 ccaata 216  Q
    | ||||    
T  6672191 ctaata 6672196  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 24533979 - 24533946
Alignment:
Q  1 aaggaaagggatatccatttctaataatgtgaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  24533979 aaggaaagggatatccatttctaataatgtgaca 24533946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 21123312 - 21123356
Alignment:
Q  111 tttggactatgaaaatgcattagagagcaagaacaatgtcatttt 155  Q
    |||||||||||||||||||||||||| ||||| | ||||||||||    
T  21123312 tttggactatgaaaatgcattagagaacaagaccgatgtcatttt 21123356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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