View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16342_low_1 (Length: 565)

Name: NF16342_low_1
Description: NF16342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16342_low_1
NF16342_low_1
[»] chr2 (7 HSPs)
chr2 (18-565)||(44157620-44158169)
chr2 (25-79)||(9318037-9318091)
chr2 (451-498)||(3548436-3548483)
chr2 (25-79)||(33582033-33582087)
chr2 (17-56)||(13803547-13803586)
chr2 (25-78)||(19244169-19244222)
chr2 (26-78)||(37971956-37972008)
[»] chr4 (13 HSPs)
chr4 (388-488)||(27001523-27001623)
chr4 (393-496)||(13503869-13503972)
chr4 (391-496)||(50205384-50205489)
chr4 (451-498)||(19465529-19465576)
chr4 (17-76)||(46545763-46545822)
chr4 (17-79)||(7949416-7949478)
chr4 (29-73)||(19531970-19532014)
chr4 (20-79)||(34075563-34075621)
chr4 (17-56)||(37109336-37109375)
chr4 (17-79)||(38838849-38838911)
chr4 (20-56)||(10048035-10048071)
chr4 (16-56)||(15180789-15180829)
chr4 (27-79)||(30584784-30584836)
[»] chr5 (7 HSPs)
chr5 (18-79)||(3252251-3252312)
chr5 (25-79)||(16773867-16773921)
chr5 (17-79)||(43442248-43442310)
chr5 (27-79)||(29075843-29075895)
chr5 (17-56)||(14285213-14285252)
chr5 (17-79)||(29692348-29692410)
chr5 (32-72)||(18437152-18437192)
[»] chr1 (13 HSPs)
chr1 (398-482)||(41096000-41096084)
chr1 (27-80)||(43927544-43927597)
chr1 (17-56)||(4566600-4566639)
chr1 (26-79)||(7219880-7219933)
chr1 (17-56)||(2799914-2799953)
chr1 (17-56)||(29753701-29753740)
chr1 (17-56)||(33700758-33700797)
chr1 (17-56)||(36371522-36371561)
chr1 (17-80)||(44961817-44961880)
chr1 (25-79)||(2220032-2220086)
chr1 (26-72)||(12662343-12662389)
chr1 (25-79)||(42858599-42858653)
chr1 (17-73)||(51814546-51814602)
[»] chr7 (10 HSPs)
chr7 (20-80)||(4566390-4566449)
chr7 (17-79)||(21558180-21558242)
chr7 (17-79)||(30579387-30579449)
chr7 (17-84)||(7721421-7721488)
chr7 (17-56)||(13106767-13106806)
chr7 (17-56)||(26459395-26459434)
chr7 (17-56)||(43215236-43215275)
chr7 (17-79)||(15137605-15137667)
chr7 (17-79)||(27313696-27313758)
chr7 (29-73)||(35828290-35828334)
[»] chr6 (3 HSPs)
chr6 (451-495)||(1536644-1536688)
chr6 (25-80)||(33549164-33549219)
chr6 (17-78)||(28841466-28841527)
[»] chr8 (9 HSPs)
chr8 (25-80)||(968422-968477)
chr8 (17-80)||(43594279-43594342)
chr8 (17-73)||(13129720-13129776)
chr8 (17-56)||(8794330-8794369)
chr8 (17-56)||(18540350-18540389)
chr8 (17-80)||(27750782-27750845)
chr8 (17-56)||(33017266-33017305)
chr8 (17-79)||(6536572-6536634)
chr8 (17-73)||(23361617-23361673)
[»] scaffold0258 (1 HSPs)
scaffold0258 (25-79)||(15285-15339)
[»] chr3 (5 HSPs)
chr3 (17-54)||(16354879-16354916)
chr3 (25-55)||(39253757-39253787)
chr3 (528-565)||(3603980-3604017)
chr3 (26-71)||(29563961-29564006)
chr3 (31-79)||(7973622-7973670)
[»] scaffold0238 (1 HSPs)
scaffold0238 (17-56)||(2696-2735)
[»] scaffold0032 (1 HSPs)
scaffold0032 (25-80)||(112342-112397)


Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 565
Target Start/End: Original strand, 44157620 - 44158169
Alignment:
Q  18 tcctcagggtctcaggttcgattctctctgatgccaattcagatggactaatttagtttcttataaatnnnnnnnnntccacatgaaatagatgttggct 117  Q
    |||||| |||||||  ||||||||| |||||||||||||| ||||| |||||||||||||||  |||          |||||||||||||||||||||||    
T  44157620 tcctcaaggtctcatattcgattctttctgatgccaattcggatgggctaatttagtttcttcaaaa----aaaaaatccacatgaaatagatgttggct 44157715  T
Q  118 tatgtgatgannnnnnnnnnct------acaggcttatacgatgattgttaattgttaaatacaacgtaaatgttaaatgaatatacaaaattgacaaaa 211  Q
    ||||||||||           |      || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44157716 tatgtgatgatttttttttaatttttttacgggcttatacgatgattgttaattgttaaatacaacgtaaatgttaaatgaatatacaaaattgacaaaa 44157815  T
Q  212 atatgatgtctctttatgattttgtatattttagtaattgtataaaatgaaaaagtaagtatatttggtttcattcattgttggaccaaaaagttgaatc 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  44157816 atatgatgtctctttatgattttgtatattttagtaattgtataaaatgaaaaagtaagtatatttggtttcattcattgttggaccaaaaagttga--- 44157912  T
Q  312 tatggtgaccgctcatgatttgtagagtgccaaagaccataattatcacgatgaatttcttttcttgaagattctttgttgaaccagagtacctaacgta 411  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||    
T  44157913 -----tgaccgctcatgatttgtagagtgccaaagaccataattatcacgatgaatttcttttcttgaagattctttgttgaaccggaatacctaacata 44158007  T
Q  412 aaatctaatagtatgtacaactatacttacaannnnnnnatgaataattattgtgagaaataatatatatacactaaagaaattgtcactc-aaaaatta 510  Q
    || ||||||||||||||||||||||| |||||       |||||||| |||| |||||||| ||||||||||||||||||||||||| ||| ||||||||    
T  44158008 aattctaatagtatgtacaactatacctacaatttttttatgaataaatattatgagaaatgatatatatacactaaagaaattgtcgctcaaaaaatta 44158107  T
Q  511 cgga-------gccattgatgcatacctacaaaaaattgtacctcacttgttttgtgaggcc 565  Q
    |  |       |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44158108 ctcatggctccgccattgatgcatacctacaaaaaattgtacctcacttgttttgtgaggcc 44158169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 9318091 - 9318037
Alignment:
Q  25 ggtctcaggttcgattctctctgatgccaattcagatggactaatttagtttctt 79  Q
    ||||||||||||||||||||||||||||||||| | ||| |||||||||||||||    
T  9318091 ggtctcaggttcgattctctctgatgccaattcgggtgggctaatttagtttctt 9318037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 451 - 498
Target Start/End: Original strand, 3548436 - 3548483
Alignment:
Q  451 atgaataattattgtgagaaataatatatatacactaaagaaattgtc 498  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||    
T  3548436 atgaataactattgtgagaaataatatatacacactaaagaaattgtc 3548483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 33582033 - 33582087
Alignment:
Q  25 ggtctcaggttcgattctctctgatgccaattcagatggactaatttagtttctt 79  Q
    |||||||||||||||||||||| ||| ||||| || ||||||||||||| |||||    
T  33582033 ggtctcaggttcgattctctctaatgtcaatttaggtggactaatttagcttctt 33582087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 13803547 - 13803586
Alignment:
Q  17 ctcctcagggtctcaggttcgattctctctgatgccaatt 56  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  13803547 ctcctcaaggtctcaggttcgattatctctgatgccaatt 13803586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 19244169 - 19244222
Alignment:
Q  25 ggtctcaggttcgattctctctgatgccaattcagatggactaatttagtttct 78  Q
    ||||||||||||||||||||||| ||||||||    ||| ||||||||||||||    
T  19244169 ggtctcaggttcgattctctctggtgccaatttgagtgggctaatttagtttct 19244222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 37971956 - 37972008
Alignment:
Q  26 gtctcaggttcgattctctctgatgccaattcagatggactaatttagtttct 78  Q
    |||||||||||||||||||| | |||||||| || ||| ||||||||| ||||    
T  37971956 gtctcaggttcgattctctccggtgccaatttaggtgggctaatttagcttct 37972008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 388 - 488
Target Start/End: Original strand, 27001523 - 27001623
Alignment:
Q  388 tgttgaaccagagtacctaacgtaaaatctaatagtatgtacaactatacttacaannnnnnnatgaataattattgtgagaaataatatatatacacta 487  Q
    ||||||||  |||||||| ||||||||||||||||||||||| ||||||  |||||       ||||||||||||||||| |||||||||||||||||||    
T  27001523 tgttgaactggagtacctgacgtaaaatctaatagtatgtaccactatatctacaattttttcatgaataattattgtgataaataatatatatacacta 27001622  T
Q  488 a 488  Q
    |    
T  27001623 a 27001623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 393 - 496
Target Start/End: Original strand, 13503869 - 13503972
Alignment:
Q  393 aaccagagtacctaacgtaaaatctaatagtatgtacaactatacttacaannnnnnnatgaataattattgtgagaaataatatatatacactaaagaa 492  Q
    |||| |||||||| || ||||||| |||||||||||| | ||||| |||||       |||||||||||||||||| |||||||||||||||||||||||    
T  13503869 aaccggagtacctgacataaaatccaatagtatgtaccattatacctacaaattttttatgaataattattgtgagtaataatatatatacactaaagaa 13503968  T
Q  493 attg 496  Q
    ||||    
T  13503969 attg 13503972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 391 - 496
Target Start/End: Complemental strand, 50205489 - 50205384
Alignment:
Q  391 tgaaccagagtacct-aacgtaaaatctaatagtatgtacaactatacttacaannnnnnnatgaataattattgtgagaaataatatatatacactaaa 489  Q
    ||||||||||||||| ||||||| ||  |||||||||||| ||||||| || ||       ||||||||||||| |||||||||||||||||||||||||    
T  50205489 tgaaccagagtaccttaacgtaatattcaatagtatgtaccactataccta-aaaaaatttatgaataattattttgagaaataatatatatacactaaa 50205391  T
Q  490 gaaattg 496  Q
    |||||||    
T  50205390 gaaattg 50205384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 451 - 498
Target Start/End: Original strand, 19465529 - 19465576
Alignment:
Q  451 atgaataattattgtgagaaataatatatatacactaaagaaattgtc 498  Q
    ||||||||||||| | |||||||||||||| |||||||||||||||||    
T  19465529 atgaataattatttttagaaataatatatacacactaaagaaattgtc 19465576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 46545763 - 46545822
Alignment:
Q  17 ctcctcagggtctcaggttcgattctctctgatgccaattcagatggactaatttagttt 76  Q
    ||||||| | |||||| ||||||| ||||||||| ||||| |||||||||||||||||||    
T  46545763 ctcctcaagatctcagattcgattttctctgatgtcaatttagatggactaatttagttt 46545822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 7949478 - 7949416
Alignment:
Q  17 ctcctcagggtctcaggttcgattctctctgatgccaattcagatggactaatttagtttctt 79  Q
    ||||||| ||||||||||||||||||||||| || ||||| || ||| ||||||||| |||||    
T  7949478 ctcctcaaggtctcaggttcgattctctctggtgtcaatttaggtgggctaatttagcttctt 7949416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 19532014 - 19531970
Alignment:
Q  29 tcaggttcgattctctctgatgccaattcagatggactaatttag 73  Q
    |||||||||||||||||||||||||||| || ||| |||||||||    
T  19532014 tcaggttcgattctctctgatgccaatttaggtgggctaatttag 19531970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 34075563 - 34075621
Alignment:
Q  20 ctcagggtctcaggttcgattctctctgatgccaattcagatggactaatttagtttctt 79  Q
    |||| ||||||||||| ||||||||||| | |||||| |||||||||||||||| |||||    
T  34075563 ctcaaggtctcaggttagattctctctg-taccaatttagatggactaatttagcttctt 34075621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 37109375 - 37109336
Alignment:
Q  17 ctcctcagggtctcaggttcgattctctctgatgccaatt 56  Q
    ||||||| ||||||||||||||||||||||| ||||||||    
T  37109375 ctcctcaaggtctcaggttcgattctctctggtgccaatt 37109336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 38838849 - 38838911
Alignment:
Q  17 ctcctcagggtctcaggttcgattctctctgatgccaattcagatggactaatttagtttctt 79  Q
    ||||||| ||||| ||||||||||||||| |||| |||||  | ||| |||||||||||||||    
T  38838849 ctcctcaaggtcttaggttcgattctctccgatggcaatttcggtgggctaatttagtttctt 38838911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 10048035 - 10048071
Alignment:
Q  20 ctcagggtctcaggttcgattctctctgatgccaatt 56  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  10048035 ctcatggtctcaggttcgattctctctgatgctaatt 10048071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 15180789 - 15180829
Alignment:
Q  16 actcctcagggtctcaggttcgattctctctgatgccaatt 56  Q
    |||||||| ||||| ||||||||||||||||| ||||||||    
T  15180789 actcctcaaggtcttaggttcgattctctctggtgccaatt 15180829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 30584836 - 30584784
Alignment:
Q  27 tctcaggttcgattctctctgatgccaattcagatggactaatttagtttctt 79  Q
    |||||||||||||| |||| |||| ||||| |||||  |||||||||||||||    
T  30584836 tctcaggttcgattatctccgatgtcaatttagatgagctaatttagtttctt 30584784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 3252312 - 3252251
Alignment:
Q  18 tcctcagggtctcaggttcgattctctctgatgccaattcagatggactaatttagtttctt 79  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  3252312 tcctcaggctctcaggttcgattctctctgatgccaattcggatgggctaatttagtttctt 3252251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 16773867 - 16773921
Alignment:
Q  25 ggtctcaggttcgattctctctgatgccaattcagatggactaatttagtttctt 79  Q
    |||||||||||||||||||||||||||||||| || ||| ||||||||| |||||    
T  16773867 ggtctcaggttcgattctctctgatgccaatttaggtgggctaatttagcttctt 16773921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 43442248 - 43442310
Alignment:
Q  17 ctcctcagggtctcaggttcgattctctctgatgccaattcagatggactaatttagtttctt 79  Q
    ||||||| ||||||||||||||||||||||| || |||||  ||||| |||||||||||||||    
T  43442248 ctcctcaaggtctcaggttcgattctctctgttgtcaatttggatgggctaatttagtttctt 43442310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 29075843 - 29075895
Alignment:
Q  27 tctcaggttcgattctctctgatgccaattcagatggactaatttagtttctt 79  Q
    ||||| ||||||||||||||| |||||||| |||||| ||||||||| |||||    
T  29075843 tctcatgttcgattctctctggtgccaatttagatgggctaatttagcttctt 29075895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 14285213 - 14285252
Alignment:
Q  17 ctcctcagggtctcaggttcgattctctctgatgccaatt 56  Q
    ||||||| ||||||||||||||||||||||| ||||||||    
T  14285213 ctcctcaaggtctcaggttcgattctctctggtgccaatt 14285252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 29692410 - 29692348
Alignment:
Q  17 ctcctcagggtctcaggttcgattctctctgatgccaattcagatggactaatttagtttctt 79  Q
    |||||||  ||||||||||  |||||||| ||||||||||  | |||||||||||||||||||    
T  29692410 ctcctcaaagtctcaggtttaattctctccgatgccaatttgggtggactaatttagtttctt 29692348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 18437152 - 18437192
Alignment:
Q  32 ggttcgattctctctgatgccaattcagatggactaattta 72  Q
    |||||||||||||||  |||||||| |||||||||||||||    
T  18437152 ggttcgattctctctagtgccaatttagatggactaattta 18437192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 9e-16; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 398 - 482
Target Start/End: Original strand, 41096000 - 41096084
Alignment:
Q  398 gagtacctaacgtaaaatctaatagtatgtacaactatacttacaannnnnnnatgaataattattgtgagaaataatatatata 482  Q
    |||||||| |||||||||| ||||| |||||| ||||||| |||||       ||||||||||||||||||||||||||||||||    
T  41096000 gagtacctgacgtaaaatccaatagcatgtaccactatacctacaatttttttatgaataattattgtgagaaataatatatata 41096084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 43927597 - 43927544
Alignment:
Q  27 tctcaggttcgattctctctgatgccaattcagatggactaatttagtttctta 80  Q
    ||||||||||||||||||||||||| ||||||| ||| |||||||| |||||||    
T  43927597 tctcaggttcgattctctctgatgctaattcaggtgggctaatttaatttctta 43927544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 4566600 - 4566639
Alignment:
Q  17 ctcctcagggtctcaggttcgattctctctgatgccaatt 56  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  4566600 ctcctcagggtctcaggttcgattctctctgatgtcaatt 4566639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 7219933 - 7219880
Alignment:
Q  26 gtctcaggttcgattctctctgatgccaattcagatggactaatttagtttctt 79  Q
    ||||||||||||||||||| |||| |||||| || ||||||||||||| |||||    
T  7219933 gtctcaggttcgattctctttgataccaatttaggtggactaatttagcttctt 7219880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 2799914 - 2799953
Alignment:
Q  17 ctcctcagggtctcaggttcgattctctctgatgccaatt 56  Q
    ||||||| ||||||||||||||||||||||| ||||||||    
T  2799914 ctcctcaaggtctcaggttcgattctctctggtgccaatt 2799953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 29753701 - 29753740
Alignment:
Q  17 ctcctcagggtctcaggttcgattctctctgatgccaatt 56  Q
    ||||||| ||||||||||||||||||||||| ||||||||    
T  29753701 ctcctcaaggtctcaggttcgattctctctggtgccaatt 29753740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 33700797 - 33700758
Alignment:
Q  17 ctcctcagggtctcaggttcgattctctctgatgccaatt 56  Q
    ||||||| ||||||||||||||||||||||| ||||||||    
T  33700797 ctcctcaaggtctcaggttcgattctctctggtgccaatt 33700758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 36371522 - 36371561
Alignment:
Q  17 ctcctcagggtctcaggttcgattctctctgatgccaatt 56  Q
    ||||||| ||||| ||||||||||||||||||||||||||    
T  36371522 ctcctcaaggtctgaggttcgattctctctgatgccaatt 36371561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 44961817 - 44961880
Alignment:
Q  17 ctcctcagggtctcaggttcgattctctctgatgccaattcagatggactaatttagtttctta 80  Q
    ||||||||||||||||||||||||||||||  || |||||  | ||| ||||||||| ||||||    
T  44961817 ctcctcagggtctcaggttcgattctctctagtgtcaatttgggtgggctaatttagcttctta 44961880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 2220032 - 2220086
Alignment:
Q  25 ggtctcaggttcgattctctctgatgccaattcagatggactaatttagtttctt 79  Q
    |||||||||||||||||||||  ||| ||||| | |||| |||||||||||||||    
T  2220032 ggtctcaggttcgattctctccaatgtcaatttaaatgggctaatttagtttctt 2220086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 12662343 - 12662389
Alignment:
Q  26 gtctcaggttcgattctctctgatgccaattcagatggactaattta 72  Q
    ||||||||||||||| ||||| ||||||||| || ||||||||||||    
T  12662343 gtctcaggttcgattatctctaatgccaatttaggtggactaattta 12662389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 42858653 - 42858599
Alignment:
Q  25 ggtctcaggttcgattctctctgatgccaattcagatggactaatttagtttctt 79  Q
    ||||||||||||||||||||||| || |||||   |||| |||||||||||||||    
T  42858653 ggtctcaggttcgattctctctggtgtcaatttgaatgggctaatttagtttctt 42858599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 51814546 - 51814602
Alignment:
Q  17 ctcctcagggtctcaggttcgattctctctgatgccaattcagatggactaatttag 73  Q
    ||||||| ||||||||||||||||||||| | ||||||||  | ||| |||||||||    
T  51814546 ctcctcaaggtctcaggttcgattctctccggtgccaatttgggtgggctaatttag 51814602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 4566449 - 4566390
Alignment:
Q  20 ctcagggtctcaggttcgattctctctgatgccaattcagatggactaatttagtttctta 80  Q
    |||| ||||||||||| ||||||||||| |||||||| |||||| ||||||||||||||||    
T  4566449 ctcaaggtctcaggtttgattctctctggtgccaatttagatgg-ctaatttagtttctta 4566390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 21558180 - 21558242
Alignment:
Q  17 ctcctcagggtctcaggttcgattctctctgatgccaattcagatggactaatttagtttctt 79  Q
    ||||||| ||||||||||||||||||||||| |||||||| || |||  |||||||| |||||    
T  21558180 ctcctcaaggtctcaggttcgattctctctggtgccaatttaggtgggttaatttagcttctt 21558242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 30579387 - 30579449
Alignment:
Q  17 ctcctcagggtctcaggttcgattctctctgatgccaattcagatggactaatttagtttctt 79  Q
    ||||||| |||||||||||||||| |||||| |||||||| || ||| ||||||||| |||||    
T  30579387 ctcctcaaggtctcaggttcgattttctctggtgccaatttaggtgggctaatttagcttctt 30579449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 7721421 - 7721488
Alignment:
Q  17 ctcctcagggtctcaggttcgattctctctgatgccaattcagatggactaatttagtttcttataaa 84  Q
    ||||||| ||||||| ||||||||||||||| || |||||  |||||| |||||||| ||||| ||||    
T  7721421 ctcctcaaggtctcatgttcgattctctctggtgtcaatttggatggaataatttagcttcttctaaa 7721488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 13106806 - 13106767
Alignment:
Q  17 ctcctcagggtctcaggttcgattctctctgatgccaatt 56  Q
    ||||||| ||||||||||||||||||||||||||| ||||    
T  13106806 ctcctcaaggtctcaggttcgattctctctgatgctaatt 13106767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 26459434 - 26459395
Alignment:
Q  17 ctcctcagggtctcaggttcgattctctctgatgccaatt 56  Q
    ||||||| ||||||||||||||||||||||| ||||||||    
T  26459434 ctcctcaaggtctcaggttcgattctctctggtgccaatt 26459395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 43215236 - 43215275
Alignment:
Q  17 ctcctcagggtctcaggttcgattctctctgatgccaatt 56  Q
    ||||||| |||||||||||||||||||||| |||||||||    
T  43215236 ctcctcaaggtctcaggttcgattctctcttatgccaatt 43215275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 15137605 - 15137667
Alignment:
Q  17 ctcctcagggtctcaggttcgattctctctgatgccaattcagatggactaatttagtttctt 79  Q
    ||||||| ||||||||||| ||||||||||| || |||||  | ||| |||||||||||||||    
T  15137605 ctcctcaaggtctcaggttagattctctctggtgtcaatttgggtgggctaatttagtttctt 15137667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 27313758 - 27313696
Alignment:
Q  17 ctcctcagggtctcaggttcgattctctctgatgccaattcagatggactaatttagtttctt 79  Q
    ||||||| ||| |||| ||||||||||||||||||||||| || ||  ||||||||| |||||    
T  27313758 ctcctcaaggtttcagattcgattctctctgatgccaatttaggtgagctaatttagcttctt 27313696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 35828290 - 35828334
Alignment:
Q  29 tcaggttcgattctctctgatgccaattcagatggactaatttag 73  Q
    ||||||| |||||||||| |||||||||  |||||||||||||||    
T  35828290 tcaggtttgattctctcttatgccaatttggatggactaatttag 35828334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 451 - 495
Target Start/End: Original strand, 1536644 - 1536688
Alignment:
Q  451 atgaataattattgtgagaaataatatatatacactaaagaaatt 495  Q
    |||| |||||||| |||||||||||||||||||||||||||||||    
T  1536644 atgattaattattttgagaaataatatatatacactaaagaaatt 1536688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 33549164 - 33549219
Alignment:
Q  25 ggtctcaggttcgattctctctgatgccaattcagatggactaatttagtttctta 80  Q
    ||||||||||||||||||||| |||||||||| || ||  ||||||||| ||||||    
T  33549164 ggtctcaggttcgattctctcggatgccaatttaggtgagctaatttagcttctta 33549219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 28841466 - 28841527
Alignment:
Q  17 ctcctcagggtctcaggttcgattctctctgatgccaattcagatggactaatttagtttct 78  Q
    ||||||| ||||||| ||||||||||||| | || ||||| |||| | ||||||||||||||    
T  28841466 ctcctcaaggtctcaagttcgattctctccggtgtcaatttagattggctaatttagtttct 28841527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 968422 - 968477
Alignment:
Q  25 ggtctcaggttcgattctctctgatgccaattcagatggactaatttagtttctta 80  Q
    ||||||||||||||||||||| |||||||||| || ||| ||||||||| ||||||    
T  968422 ggtctcaggttcgattctctccgatgccaatttaggtgggctaatttagcttctta 968477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 43594342 - 43594279
Alignment:
Q  17 ctcctcagggtctcaggttcgattctctctgatgccaattcagatggactaatttagtttctta 80  Q
    ||||||| ||||||||||||||||||||||  || |||||  ||||| ||||||||||||||||    
T  43594342 ctcctcaaggtctcaggttcgattctctctagtgtcaatttggatgggctaatttagtttctta 43594279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 13129720 - 13129776
Alignment:
Q  17 ctcctcagggtctcaggttcgattctctctgatgccaattcagatggactaatttag 73  Q
    ||||||| ||| ||||||||||||||||||| ||||||||  |||||| ||||||||    
T  13129720 ctcctcaaggtttcaggttcgattctctctggtgccaatttggatggattaatttag 13129776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 8794369 - 8794330
Alignment:
Q  17 ctcctcagggtctcaggttcgattctctctgatgccaatt 56  Q
    ||||||||||||||||||||||||||||||| | ||||||    
T  8794369 ctcctcagggtctcaggttcgattctctctggtaccaatt 8794330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 18540350 - 18540389
Alignment:
Q  17 ctcctcagggtctcaggttcgattctctctgatgccaatt 56  Q
    ||||||| ||||||||||||||||||||||| ||||||||    
T  18540350 ctcctcaaggtctcaggttcgattctctctggtgccaatt 18540389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 27750782 - 27750845
Alignment:
Q  17 ctcctcagggtctcaggttcgattctctctgatgccaattcagatggactaatttagtttctta 80  Q
    ||||||| ||||||||||||||||| ||||  || |||||  ||||||||||||||| ||||||    
T  27750782 ctcctcaaggtctcaggttcgattccctctagtgtcaatttggatggactaatttagcttctta 27750845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 33017266 - 33017305
Alignment:
Q  17 ctcctcagggtctcaggttcgattctctctgatgccaatt 56  Q
    ||||||| ||||||||||||||||||||||| ||||||||    
T  33017266 ctcctcaaggtctcaggttcgattctctctggtgccaatt 33017305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 6536572 - 6536634
Alignment:
Q  17 ctcctcagggtctcaggttcgattctctctgatgccaattcagatggactaatttagtttctt 79  Q
    ||||||| |||||||||||| |||||||||| |||||||| || |||  |||||||| |||||    
T  6536572 ctcctcaaggtctcaggttcaattctctctggtgccaatttaggtgggttaatttagcttctt 6536634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 23361673 - 23361617
Alignment:
Q  17 ctcctcagggtctcaggttcgattctctctgatgccaattcagatggactaatttag 73  Q
    ||||||| |||||||||||| |||||||||| || ||||| || ||| |||||||||    
T  23361673 ctcctcaaggtctcaggttcaattctctctggtgtcaatttaggtgggctaatttag 23361617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 15339 - 15285
Alignment:
Q  25 ggtctcaggttcgattctctctgatgccaattcagatggactaatttagtttctt 79  Q
    ||||||||||||||||||||| |||||||||| || ||| ||||||||| |||||    
T  15339 ggtctcaggttcgattctctcggatgccaatttaggtgggctaatttagcttctt 15285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 16354916 - 16354879
Alignment:
Q  17 ctcctcagggtctcaggttcgattctctctgatgccaa 54  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  16354916 ctcctcagggtctcaggttcgattctctctggtgccaa 16354879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 55
Target Start/End: Original strand, 39253757 - 39253787
Alignment:
Q  25 ggtctcaggttcgattctctctgatgccaat 55  Q
    |||||||||||||||||||||||||||||||    
T  39253757 ggtctcaggttcgattctctctgatgccaat 39253787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 528 - 565
Target Start/End: Complemental strand, 3604017 - 3603980
Alignment:
Q  528 acctacaaaaaattgtacctcacttgttttgtgaggcc 565  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  3604017 acctgcaaaaaattgtgcctcacttgttttgtgaggcc 3603980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 29563961 - 29564006
Alignment:
Q  26 gtctcaggttcgattctctctgatgccaattcagatggactaattt 71  Q
    |||||||||||||||||||||||||  | || ||||||||||||||    
T  29563961 gtctcaggttcgattctctctgatgttagttaagatggactaattt 29564006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 7973622 - 7973670
Alignment:
Q  31 aggttcgattctctctgatgccaattcagatggactaatttagtttctt 79  Q
    |||||||||||||||||||| |||||  | ||||||||||||| |||||    
T  7973622 aggttcgattctctctgatgtcaatttgggtggactaatttagcttctt 7973670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 2735 - 2696
Alignment:
Q  17 ctcctcagggtctcaggttcgattctctctgatgccaatt 56  Q
    ||||||| ||||||||||||||||||||||| ||||||||    
T  2735 ctcctcaaggtctcaggttcgattctctctggtgccaatt 2696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 112342 - 112397
Alignment:
Q  25 ggtctcaggttcgattctctctgatgccaattcagatggactaatttagtttctta 80  Q
    ||||| ||||||||||||||| | |||||||| || ||||||||||||| ||||||    
T  112342 ggtctgaggttcgattctctccggtgccaatttaggtggactaatttagcttctta 112397  T

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