View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16342_low_2 (Length: 204)

Name: NF16342_low_2
Description: NF16342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16342_low_2
NF16342_low_2
[»] chr4 (15 HSPs)
chr4 (7-195)||(12230807-12230995)
chr4 (76-195)||(13268018-13268137)
chr4 (82-195)||(19727534-19727647)
chr4 (76-188)||(13559361-13559473)
chr4 (76-195)||(18554716-18554830)
chr4 (81-195)||(17419480-17419594)
chr4 (74-195)||(15870940-15871061)
chr4 (74-195)||(15888515-15888636)
chr4 (8-96)||(8808812-8808900)
chr4 (8-96)||(16282892-16282980)
chr4 (7-96)||(11558510-11558599)
chr4 (86-118)||(9886997-9887029)
chr4 (76-190)||(13235237-13235341)
chr4 (84-118)||(20872219-20872253)
chr4 (73-122)||(30275168-30275217)
[»] chr3 (15 HSPs)
chr3 (10-195)||(19186781-19186966)
chr3 (74-195)||(21977104-21977225)
chr3 (74-195)||(21999535-21999656)
chr3 (74-193)||(22161732-22161851)
chr3 (76-188)||(10341062-10341174)
chr3 (76-169)||(10302744-10302837)
chr3 (74-195)||(16357814-16357933)
chr3 (7-96)||(5941660-5941749)
chr3 (11-96)||(17793443-17793528)
chr3 (11-96)||(19101883-19101968)
chr3 (74-190)||(16928556-16928670)
chr3 (7-88)||(21100619-21100700)
chr3 (51-96)||(15958242-15958287)
chr3 (73-114)||(21028871-21028912)
chr3 (73-114)||(25784203-25784244)
[»] chr2 (8 HSPs)
chr2 (74-195)||(29718090-29718211)
chr2 (72-176)||(26861203-26861307)
chr2 (13-90)||(24788601-24788678)
chr2 (76-158)||(18985269-18985351)
chr2 (18-96)||(44583932-44584010)
chr2 (7-96)||(23651789-23651878)
chr2 (54-94)||(21554002-21554042)
chr2 (74-116)||(22497193-22497234)
[»] chr7 (6 HSPs)
chr7 (81-195)||(16068058-16068172)
chr7 (76-188)||(9692984-9693096)
chr7 (19-96)||(22612532-22612609)
chr7 (16-96)||(11657709-11657789)
chr7 (16-96)||(13475071-13475151)
chr7 (73-117)||(18466884-18466928)
[»] scaffold0385 (1 HSPs)
scaffold0385 (74-195)||(16144-16265)
[»] chr8 (8 HSPs)
chr8 (76-195)||(10454067-10454186)
chr8 (72-195)||(15727753-15727879)
chr8 (143-195)||(1683229-1683281)
chr8 (136-192)||(17861385-17861441)
chr8 (147-194)||(1681192-1681239)
chr8 (54-88)||(17883301-17883335)
chr8 (72-113)||(19862363-19862404)
chr8 (72-113)||(19867000-19867041)
[»] chr1 (4 HSPs)
chr1 (76-195)||(21496562-21496680)
chr1 (74-195)||(17451406-17451525)
chr1 (74-110)||(15545327-15545363)
chr1 (72-112)||(43154381-43154421)
[»] chr5 (9 HSPs)
chr5 (81-195)||(25791827-25791941)
chr5 (72-195)||(14137949-14138072)
chr5 (78-169)||(32948837-32948927)
chr5 (124-188)||(23909173-23909237)
chr5 (75-195)||(13938961-13939079)
chr5 (11-96)||(24760922-24761007)
chr5 (81-122)||(25756303-25756344)
chr5 (79-169)||(25581329-25581419)
chr5 (74-118)||(24564983-24565027)
[»] scaffold0010 (1 HSPs)
scaffold0010 (81-195)||(143102-143216)
[»] scaffold0364 (1 HSPs)
scaffold0364 (76-169)||(14588-14681)
[»] scaffold0118 (1 HSPs)
scaffold0118 (90-195)||(11955-12060)
[»] chr6 (7 HSPs)
chr6 (76-195)||(19545140-19545254)
chr6 (81-195)||(14746549-14746663)
chr6 (18-96)||(15119009-15119086)
chr6 (74-128)||(26587843-26587897)
chr6 (81-134)||(22395459-22395512)
chr6 (73-128)||(26588160-26588215)
chr6 (162-195)||(22395518-22395551)
[»] scaffold0408 (1 HSPs)
scaffold0408 (81-195)||(14984-15098)
[»] scaffold0290 (1 HSPs)
scaffold0290 (84-184)||(11838-11938)
[»] scaffold1043 (1 HSPs)
scaffold1043 (81-195)||(516-631)
[»] scaffold0094 (1 HSPs)
scaffold0094 (76-195)||(2496-2609)
[»] scaffold0207 (1 HSPs)
scaffold0207 (79-169)||(737-827)
[»] scaffold0145 (1 HSPs)
scaffold0145 (8-96)||(14735-14823)
[»] scaffold0166 (1 HSPs)
scaffold0166 (11-96)||(3419-3504)
[»] scaffold0381 (1 HSPs)
scaffold0381 (86-118)||(11515-11547)
[»] scaffold0035 (1 HSPs)
scaffold0035 (72-113)||(15397-15438)
[»] scaffold0149 (1 HSPs)
scaffold0149 (72-128)||(35468-35523)


Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 7 - 195
Target Start/End: Complemental strand, 12230995 - 12230807
Alignment:
Q  7 gagaagcaaagggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatctttgcacttta 106  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||| ||||| |||||||||||| |||||||||||||||||| |||||||||||||||    
T  12230995 gagaagcaaagggagagaagcagaaccctcgtgtagcaacatcaagccaaactgaaggtttctacagattcgaggtaagggggataatctttgcacttta 12230896  T
Q  107 gggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaattttgatgagagaatgatgatg 195  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12230895 gggtatcttaatctattatgggagggttgtcttaaattttaatatgttgttgctattatgatgtgaattttgatgagagaatgatgatg 12230807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 76 - 195
Target Start/End: Complemental strand, 13268137 - 13268018
Alignment:
Q  76 tcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaatt 175  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||  |||||| | ||||||||||||||    
T  13268137 tcgaggtaagggggagaatctttgcactttagggtatcttaatttatgatgggagggttttcttaaattttaatacattgttgttgttatgatgtgaatt 13268038  T
Q  176 ttgatgagagaatgatgatg 195  Q
    |||| |||||||||||||||    
T  13268037 ttgacgagagaatgatgatg 13268018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 82 - 195
Target Start/End: Original strand, 19727534 - 19727647
Alignment:
Q  82 taagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaattttgatg 181  Q
    ||||| ||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||| |||||||| || |||||||||||||||||| |    
T  19727534 taaggcggagaatctttgcactttagggtatcttaatctatgacgggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgacg 19727633  T
Q  182 agagaatgatgatg 195  Q
    ||||||||||||||    
T  19727634 agagaatgatgatg 19727647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 76 - 188
Target Start/End: Original strand, 13559361 - 13559473
Alignment:
Q  76 tcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaatt 175  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||| ||||||| | |||||||| ||| |    
T  13559361 tcgaggtaaggaggagaatctttgcactttagagtatcttaatctatgatgggagggttgtcttaaattttaataagttgttgatgttatgatgagaagt 13559460  T
Q  176 ttgatgagagaat 188  Q
    |||||||||||||    
T  13559461 ttgatgagagaat 13559473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 76 - 195
Target Start/End: Original strand, 18554716 - 18554830
Alignment:
Q  76 tcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaatt 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||| ||     |||||||||||||||||| ||||||||||||||    
T  18554716 tcgaggtaagggggagaatctttgcactttagggtatcttaatctatgatatgagggttgtc-----ttttaatatgttgttgctgttatgatgtgaatt 18554810  T
Q  176 ttgatgagagaatgatgatg 195  Q
    ||||||||| ||||||||||    
T  18554811 ttgatgagaaaatgatgatg 18554830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 81 - 195
Target Start/End: Complemental strand, 17419594 - 17419480
Alignment:
Q  81 gtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaattttgat 180  Q
    |||||||| ||||||||||||||||||||||||||||||||| | || ||  || | ||||||||||| |||||||| ||||||||||||||||||||||    
T  17419594 gtaaggggaagaatctttgcactttagggtatcttaatctatgaaggaagatttgttttaaattttaaaatgttgttactattatgatgtgaattttgat 17419495  T
Q  181 gagagaatgatgatg 195  Q
    |||||||||||||||    
T  17419494 gagagaatgatgatg 17419480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 74 - 195
Target Start/End: Original strand, 15870940 - 15871061
Alignment:
Q  74 attcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaa 173  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||    | || || ||||||||| ||    
T  15870940 attcaaggtaagggggagaatctttgcactttagggtatcttaatttatgatgggagggttgtcttaaattttaatgcactttttctgttatgatgtaaa 15871039  T
Q  174 ttttgatgagagaatgatgatg 195  Q
    |||||||||| |||||||||||    
T  15871040 ttttgatgagtgaatgatgatg 15871061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 74 - 195
Target Start/End: Original strand, 15888515 - 15888636
Alignment:
Q  74 attcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaa 173  Q
    |||| ||||||| |||||||||||||||||||||| ||||| ||| ||| ||||||||||| ||||||||||||||    | ||||| ||||||||| ||    
T  15888515 attcaaggtaagagggagaatctttgcactttaggatatctaaatttatgatgggagggttgtcttaaattttaatgcacttttgctgttatgatgtaaa 15888614  T
Q  174 ttttgatgagagaatgatgatg 195  Q
    | |||||||| |||||||||||    
T  15888615 tattgatgagtgaatgatgatg 15888636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 8808900 - 8808812
Alignment:
Q  8 agaagcaaagggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 96  Q
    ||||||| | ||||||| || ||||||||||| ||| |  || ||||||||| |||||||||||||||| |||||||||||||||||||    
T  8808900 agaagcagaaggagagaggcggaaccctagtgcagcgatatcgagtcaaaccaaaggtttctacggatttgaggtaagggggagaatct 8808812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 16282892 - 16282980
Alignment:
Q  8 agaagcaaagggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 96  Q
    |||||||||| || |||||  |||||||| || |||||| || ||||||||| || |||||||||| ||||||||||||||||||||||    
T  16282892 agaagcaaagagaaagaagtggaaccctactgcagcaacatcgagtcaaaccaaatgtttctacgggttcgaggtaagggggagaatct 16282980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 11558599 - 11558510
Alignment:
Q  7 gagaagcaaagggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 96  Q
    |||||||| | |||||||||  |||||||| || | |||| || || |||||||||||||||||||||||| |||||||| |||||||||    
T  11558599 gagaagcagatggagagaagtggaaccctaatgcaacaacatcgagccaaaccgaaggtttctacggattctaggtaaggaggagaatct 11558510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 118
Target Start/End: Complemental strand, 9887029 - 9886997
Alignment:
Q  86 ggggagaatctttgcactttagggtatcttaat 118  Q
    |||||||||||||||||||||||||||||||||    
T  9887029 ggggagaatctttgcactttagggtatcttaat 9886997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 76 - 190
Target Start/End: Complemental strand, 13235341 - 13235237
Alignment:
Q  76 tcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaatt 175  Q
    |||||||||  ||| |||||||||||||||||||||| ||||| ||| | || ||||          |||||||||||||||  | ||||||||||||||    
T  13235341 tcgaggtaaacgggggaatctttgcactttagggtatattaatttatgacggaaggg----------ttttaatatgttgttagtgttatgatgtgaatt 13235252  T
Q  176 ttgatgagagaatga 190  Q
    |||| ||||||||||    
T  13235251 ttgacgagagaatga 13235237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 118
Target Start/End: Original strand, 20872219 - 20872253
Alignment:
Q  84 agggggagaatctttgcactttagggtatcttaat 118  Q
    |||||||||||||||||||||| ||||||||||||    
T  20872219 agggggagaatctttgcacttttgggtatcttaat 20872253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 30275168 - 30275217
Alignment:
Q  73 gattcgaggtaagggggagaatctttgcactttagggtatcttaatctat 122  Q
    ||||||||||||| ||||||||| || |||||||||||| |||| |||||    
T  30275168 gattcgaggtaagtgggagaatcatttcactttagggtaacttattctat 30275217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 5e-58; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 10 - 195
Target Start/End: Complemental strand, 19186966 - 19186781
Alignment:
Q  10 aagcaaagggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatctttgcactttaggg 109  Q
    ||||| |||||||||||| ||||||||| | |||||| || || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  19186966 aagcagagggagagaagcggaaccctagggcagcaacatcgagccaaaccgaaggtttctacggattcgaggtaaggaggagaatctttgcactttaggg 19186867  T
Q  110 tatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaattttgatgagagaatgatgatg 195  Q
    ||||||||| ||| ||||| ||||  |||||||||||||||  |||||||| ||||||||||||||||||| || |||||||||||    
T  19186866 tatcttaatttatgatgggtgggtcgtcttaaattttaatacattgttgctgttatgatgtgaattttgatcagtgaatgatgatg 19186781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 74 - 195
Target Start/End: Complemental strand, 21977225 - 21977104
Alignment:
Q  74 attcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaa 173  Q
    |||| |||||||||| ||||||||||||||||||||||||||||| ||| |||| |||||| |||||||||||||||  |||||||| ||||||||||||    
T  21977225 attcaaggtaaggggtagaatctttgcactttagggtatcttaatttatgatggaagggttgtcttaaattttaatacattgttgctgttatgatgtgaa 21977126  T
Q  174 ttttgatgagagaatgatgatg 195  Q
    |||||||||| |||||||||||    
T  21977125 ttttgatgagtgaatgatgatg 21977104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 74 - 195
Target Start/End: Complemental strand, 21999656 - 21999535
Alignment:
Q  74 attcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaa 173  Q
    |||| |||||||||| ||||||||||||||||||||||||||||| ||| |||| |||||| |||||||||||||||  |||||||| ||||||||||||    
T  21999656 attcaaggtaaggggtagaatctttgcactttagggtatcttaatttatgatggaagggttgtcttaaattttaatacattgttgctgttatgatgtgaa 21999557  T
Q  174 ttttgatgagagaatgatgatg 195  Q
    |||||||||| |||||||||||    
T  21999556 ttttgatgagtgaatgatgatg 21999535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 74 - 193
Target Start/End: Complemental strand, 22161851 - 22161732
Alignment:
Q  74 attcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaa 173  Q
    |||| |||||||||| ||||||||||||||||||||||||||||| ||| |||| |||||| |||||||||| ||||  |||||||| ||||||||||||    
T  22161851 attcaaggtaaggggtagaatctttgcactttagggtatcttaatttatgatggaagggttgtcttaaatttgaatacattgttgctgttatgatgtgaa 22161752  T
Q  174 ttttgatgagagaatgatga 193  Q
    |||||||||| |||||||||    
T  22161751 ttttgatgagtgaatgatga 22161732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 76 - 188
Target Start/End: Complemental strand, 10341174 - 10341062
Alignment:
Q  76 tcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaatt 175  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||  ||||||| || ||||||||||||||| ||||||| | |||||||| |||||    
T  10341174 tcgaagtaagggggagaatatttgcactttagggtatcttaatctatggtgggaggattgtcttaaattttaataagttgttgatgttatgatgagaatt 10341075  T
Q  176 ttgatgagagaat 188  Q
    |||||||||||||    
T  10341074 ttgatgagagaat 10341062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 76 - 169
Target Start/End: Complemental strand, 10302837 - 10302744
Alignment:
Q  76 tcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatg 169  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||| | ||||||||    
T  10302837 tcgaagtacgggggagaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaataagttgttgatgttatgatg 10302744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 74 - 195
Target Start/End: Original strand, 16357814 - 16357933
Alignment:
Q  74 attcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaa 173  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||| |||| ||||||||||||||    | ||||| ||||||||| ||    
T  16357814 attcgaggtaagggg-agaatctttgcactttagggtatcttaatttatgatggga-ggttgtcttaaattttaatgcacttttgctgttatgatgtaaa 16357911  T
Q  174 ttttgatgagagaatgatgatg 195  Q
    | |||||||| |||||||||||    
T  16357912 tgttgatgagtgaatgatgatg 16357933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 5941660 - 5941749
Alignment:
Q  7 gagaagcaaagggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 96  Q
    |||||||| ||||||||||||  ||||||||||||||||| ||  |||||||| |||||||||| ||||| |||||||||| ||||||||    
T  5941660 gagaagcatagggagagaagcgaaaccctagtgtagcaacatcgggtcaaaccaaaggtttctatggatttgaggtaagggagagaatct 5941749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 17793528 - 17793443
Alignment:
Q  11 agcaaagggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 96  Q
    |||| ||| |||||||| ||||| ||||| |||||| || || |||||||||||||||||| ||||||||||||||||||||||||    
T  17793528 agcagaggaagagaagcggaaccgtagtgcagcaacatcgagccaaaccgaaggtttctacagattcgaggtaagggggagaatct 17793443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 19101968 - 19101883
Alignment:
Q  11 agcaaagggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 96  Q
    |||| ||| |||||||| ||||| ||||| |||||| || || |||||||||||||||||| ||||||||||||||||||||||||    
T  19101968 agcagaggaagagaagcggaaccgtagtgcagcaacatcgagccaaaccgaaggtttctacagattcgaggtaagggggagaatct 19101883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 74 - 190
Target Start/End: Complemental strand, 16928670 - 16928556
Alignment:
Q  74 attcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgg-gagggttttcttaaattttaatatgttgttgctattatgatgtga 172  Q
    |||||||||||||| |||||| ||| |||||||  |||||||||||||| ||||  |||||| |||||||||||||||||||||||   ||||| |||||    
T  16928670 attcgaggtaagggagagaatattttcactttaaagtatcttaatctatgatggaaagggttgtcttaaattttaatatgttgttg---ttatggtgtga 16928574  T
Q  173 attttgatgagagaatga 190  Q
    |||| || ||||| ||||    
T  16928573 atttggacgagaggatga 16928556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 21100619 - 21100700
Alignment:
Q  7 gagaagcaaagggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggg 88  Q
    ||||||||  ||||||||||| ||||||||||| |||||| || || ||||||||||||||||| ||||| |||||||||||    
T  21100619 gagaagcagggggagagaagcggaaccctagtgcagcaacatcgagccaaaccgaaggtttctatggatttgaggtaagggg 21100700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 15958242 - 15958287
Alignment:
Q  51 agtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 96  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||    
T  15958242 agtccaaccgaaggtttctacggatttgaggtaagggggagaatct 15958287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 21028912 - 21028871
Alignment:
Q  73 gattcgaggtaagggggagaatctttgcactttagggtatct 114  Q
    |||||||||||||||||||| || || |||||||||||||||    
T  21028912 gattcgaggtaagggggagattcctttcactttagggtatct 21028871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 25784203 - 25784244
Alignment:
Q  73 gattcgaggtaagggggagaatctttgcactttagggtatct 114  Q
    |||||||||||||||||||| || || |||||||||||||||    
T  25784203 gattcgaggtaagggggagattcctttcactttagggtatct 25784244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 4e-46; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 74 - 195
Target Start/End: Original strand, 29718090 - 29718211
Alignment:
Q  74 attcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaa 173  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||| |||| |||||| ||||||||||||||||||||||| | ||||||||||||    
T  29718090 attcgaggtaagggggagaatatttgcactttagagtatcttaatctatgatggaagggttgtcttaaattttaatatgttgttgttgttatgatgtgaa 29718189  T
Q  174 ttttgatgagagaatgatgatg 195  Q
    ||||||||||||||||||||||    
T  29718190 ttttgatgagagaatgatgatg 29718211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 72 - 176
Target Start/End: Original strand, 26861203 - 26861307
Alignment:
Q  72 ggattcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtg 171  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| || |||| |||||| | |||||||||||||| || ||||| ||||| |||     
T  26861203 ggattcgaggtaagggggagattctttgcactttagggtatcttaatccatgatggaagggttgtattaaattttaatatattattgctgttatggtgtt 26861302  T
Q  172 aattt 176  Q
    |||||    
T  26861303 aattt 26861307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 24788678 - 24788601
Alignment:
Q  13 caaagggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaaggggga 90  Q
    ||||||||||||||| ||||||||||| |||||| || || |||||||||||||||||||||||||||||||||||||    
T  24788678 caaagggagagaagcggaaccctagtgcagcaacttctagccaaaccgaaggtttctacggattcgaggtaaggggga 24788601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 76 - 158
Target Start/End: Original strand, 18985269 - 18985351
Alignment:
Q  76 tcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttg 158  Q
    ||||| ||||||||||||||||||||| |||||||||| |||||||| || |||||||| | |||||||||||||||||||||    
T  18985269 tcgagataagggggagaatctttgcacattagggtatcgtaatctatgataggagggttgtattaaattttaatatgttgttg 18985351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 44583932 - 44584010
Alignment:
Q  18 ggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 96  Q
    |||||||||| ||| ||||||| |||||| |||||||||||| |||||||||||||||| |||||||||||||||||||    
T  44583932 ggagagaagcggaatcctagtgcagcaacatcaagtcaaaccaaaggtttctacggatttgaggtaagggggagaatct 44584010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 23651789 - 23651878
Alignment:
Q  7 gagaagcaaagggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 96  Q
    |||||||||||| |||||||| |||||||| || |||||| || || ||||| |||||| ||||| ||||||||||||||||||||||||    
T  23651789 gagaagcaaaggtagagaagcggaaccctaatgcagcaacatcgagccaaactgaaggtatctacagattcgaggtaagggggagaatct 23651878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 21554002 - 21554042
Alignment:
Q  54 caaaccgaaggtttctacggattcgaggtaagggggagaat 94  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  21554002 caaaacgaaggtttctacggattcgaggtaagggggagaat 21554042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 116
Target Start/End: Original strand, 22497193 - 22497234
Alignment:
Q  74 attcgaggtaagggggagaatctttgcactttagggtatctta 116  Q
    ||||||| ||||||||||||||||||||| |||||||||||||    
T  22497193 attcgagctaagggggagaatctttgcac-ttagggtatctta 22497234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 7e-42; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 81 - 195
Target Start/End: Original strand, 16068058 - 16068172
Alignment:
Q  81 gtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaattttgat 180  Q
    ||||||||||||||||||||| |||||||||||||||||||| | ||||||||| |||||||||||||||||||||| || |||||||||||||||||||    
T  16068058 gtaagggggagaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgttatgatgtgaattttgat 16068157  T
Q  181 gagagaatgatgatg 195  Q
    |||| ||||||||||    
T  16068158 gagaaaatgatgatg 16068172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 76 - 188
Target Start/End: Original strand, 9692984 - 9693096
Alignment:
Q  76 tcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaatt 175  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||| ||||||| | |||||||| ||| |    
T  9692984 tcgaggtaaggaggagaatctttgcactttagagtatcttaatctatgatgggagggttgtcttaaattttaataagttgttgatgttatgatgagaagt 9693083  T
Q  176 ttgatgagagaat 188  Q
    |||||||||||||    
T  9693084 ttgatgagagaat 9693096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 22612532 - 22612609
Alignment:
Q  19 gagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 96  Q
    ||||||||| ||||||||||| | |||| || || |||||||||||||||||||||||||||||||||||||||||||    
T  22612532 gagagaagcggaaccctagtgcaacaacatcgagccaaaccgaaggtttctacggattcgaggtaagggggagaatct 22612609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 11657789 - 11657709
Alignment:
Q  16 agggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 96  Q
    |||||||||||  ||||||||||| ||| || ||||| |||||| ||||||||||||||||||||||||||| ||||||||    
T  11657789 agggagagaagaggaaccctagtgcagctacatcaagccaaaccaaaggtttctacggattcgaggtaagggtgagaatct 11657709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 13475071 - 13475151
Alignment:
Q  16 agggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 96  Q
    |||||||||||| ||||||||||| |||||| || || |||| |||||||||||||||||||||||||| ||| |||||||    
T  13475071 agggagagaagctgaaccctagtgcagcaacatcgaggcaaatcgaaggtttctacggattcgaggtaaagggaagaatct 13475151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 18466884 - 18466928
Alignment:
Q  73 gattcgaggtaagggggagaatctttgcactttagggtatcttaa 117  Q
    ||||||| ||||||||||||||||||   ||||||||||||||||    
T  18466884 gattcgatgtaagggggagaatctttttcctttagggtatcttaa 18466928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 74 - 195
Target Start/End: Complemental strand, 16265 - 16144
Alignment:
Q  74 attcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaa 173  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||  |||||||||||||||  |||||||| ||||||||||||    
T  16265 attcgaggtaagggggagaatctttgtactttagggtatcttaatttatgatgggagggtcgtcttaaattttaatacattgttgcttttatgatgtgaa 16166  T
Q  174 ttttgatgagagaatgatgatg 195  Q
    |||||||||| |||||||||||    
T  16165 ttttgatgagtgaatgatgatg 16144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 76 - 195
Target Start/End: Original strand, 10454067 - 10454186
Alignment:
Q  76 tcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaatt 175  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||| ||||| ||||| || || ||||||||||||| ||||| ||||| ||||||||    
T  10454067 tcgaggtaaggggaagaatctttgaactttagggtatcttaatctatgatgggtgggttgtcctatattttaatatgtttttgctgttatggtgtgaatt 10454166  T
Q  176 ttgatgagagaatgatgatg 195  Q
    ||||||||||||||||||||    
T  10454167 ttgatgagagaatgatgatg 10454186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 72 - 195
Target Start/End: Complemental strand, 15727879 - 15727753
Alignment:
Q  72 ggattcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgg------gagggttttcttaaattttaatatgttgttgctattat 165  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||| ||||      ||||||| | ||| |||||||||||||||||   ||||    
T  15727879 ggattcgaggtaagggggagaatccttacactttagggtatcttaatctatgatgggattgagagggttgtattagattttaatatgttgttg---ttat 15727783  T
Q  166 gatgtgaattttgatgagagaatgatgatg 195  Q
    |||||||||||| ||||||| |||| ||||    
T  15727782 gatgtgaatttttatgagaggatgaagatg 15727753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 1683281 - 1683229
Alignment:
Q  143 ttttaatatgttgttgctattatgatgtgaattttgatgagagaatgatgatg 195  Q
    |||||||||||||||||  ||||||||||||||||||||||||| ||||||||    
T  1683281 ttttaatatgttgttgcggttatgatgtgaattttgatgagagactgatgatg 1683229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 17861385 - 17861441
Alignment:
Q  136 tcttaaattttaatatgttgttgctattatgatgtgaattttgatgagagaatgatg 192  Q
    ||||||||||||| |||||||| || |||||| ||||||||||||||||||||||||    
T  17861385 tcttaaattttaaaatgttgttactgttatgacgtgaattttgatgagagaatgatg 17861441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 194
Target Start/End: Complemental strand, 1681239 - 1681192
Alignment:
Q  147 aatatgttgttgctattatgatgtgaattttgatgagagaatgatgat 194  Q
    |||||||||||||  ||||||||||||||||||||||||| |||||||    
T  1681239 aatatgttgttgcggttatgatgtgaattttgatgagagactgatgat 1681192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 88
Target Start/End: Complemental strand, 17883335 - 17883301
Alignment:
Q  54 caaaccgaaggtttctacggattcgaggtaagggg 88  Q
    ||||||||||||||||| |||||||||||||||||    
T  17883335 caaaccgaaggtttctatggattcgaggtaagggg 17883301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 113
Target Start/End: Complemental strand, 19862404 - 19862363
Alignment:
Q  72 ggattcgaggtaagggggagaatctttgcactttagggtatc 113  Q
    ||||||||||||||||||||| || || ||||||||||||||    
T  19862404 ggattcgaggtaagggggagattcctttcactttagggtatc 19862363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 113
Target Start/End: Complemental strand, 19867041 - 19867000
Alignment:
Q  72 ggattcgaggtaagggggagaatctttgcactttagggtatc 113  Q
    ||||||||||||||||||||| || || ||||||||||||||    
T  19867041 ggattcgaggtaagggggagattcctttcactttagggtatc 19867000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 76 - 195
Target Start/End: Complemental strand, 21496680 - 21496562
Alignment:
Q  76 tcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaatt 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||| ||||||||||| ||| |||||| |||||     
T  21496680 tcgaggtaagggggagaatctttgcactttagggtatcttaatcta-tgtgggagggttatcttaaatttaaatatgttgtttctaatatgatatgaata 21496582  T
Q  176 ttgatgagagaatgatgatg 195  Q
    || |||||||||||||||||    
T  21496581 tttatgagagaatgatgatg 21496562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 195
Target Start/End: Complemental strand, 17451525 - 17451406
Alignment:
Q  74 attcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtga- 172  Q
    |||||||| |||||  ||||||||||||||||||||||||||||| ||| || ||||||  |  |||| | |||| ||| ||||||| |||||||||||     
T  17451525 attcgagggaagggatagaatctttgcactttagggtatcttaatatatgat-ggaggg--taattaattcttaagatgatgttgctcttatgatgtgag 17451429  T
Q  173 attttgatgagagaatgatgatg 195  Q
    ||| |||||||||| | ||||||    
T  17451428 attgtgatgagagatttatgatg 17451406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 110
Target Start/End: Complemental strand, 15545363 - 15545327
Alignment:
Q  74 attcgaggtaagggggagaatctttgcactttagggt 110  Q
    ||||||||||||||| |||||||||||||||||||||    
T  15545363 attcgaggtaaggggtagaatctttgcactttagggt 15545327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 43154381 - 43154421
Alignment:
Q  72 ggattcgaggtaagggggagaatctttgcactttagggtat 112  Q
    ||||||||||||||||||||||||| |  ||||||||||||    
T  43154381 ggattcgaggtaagggggagaatctcttaactttagggtat 43154421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 4e-37; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 81 - 195
Target Start/End: Complemental strand, 25791941 - 25791827
Alignment:
Q  81 gtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaattttgat 180  Q
    ||||| ||||||||||||| |||||||||||||||||||||| |  |||||||||||||||||||||| |||||||| || |||||||||||| ||||||    
T  25791941 gtaagagggagaatctttgaactttagggtatcttaatctatgacaggagggttttcttaaattttaaaatgttgttactgttatgatgtgaactttgat 25791842  T
Q  181 gagagaatgatgatg 195  Q
    |||||||||||||||    
T  25791841 gagagaatgatgatg 25791827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 72 - 195
Target Start/End: Complemental strand, 14138072 - 14137949
Alignment:
Q  72 ggattcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtg 171  Q
    ||||||||||||||||||| ||||| |  |||||||||||||||| | | | ||||||||||| |||||||| |||||||||||||| | ||||| ||||    
T  14138072 ggattcgaggtaagggggacaatctctttactttagggtatcttattatttgatgggagggttgtcttaaatcttaatatgttgttgttgttatgctgtg 14137973  T
Q  172 aattttgatgagagaatgatgatg 195  Q
    |||||||||||  |||| ||||||    
T  14137972 aattttgatgaaggaataatgatg 14137949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 78 - 169
Target Start/End: Complemental strand, 32948927 - 32948837
Alignment:
Q  78 gaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatg 169  Q
    |||||||||||||||||||||||||||||| |||||| ||||| | ||||||||||| |||| |||||||||||||||||||| ||||||||    
T  32948927 gaggtaagggggagaatctttgcactttagagtatctaaatct-tgatgggagggttgtctttaattttaatatgttgttgctgttatgatg 32948837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 124 - 188
Target Start/End: Complemental strand, 23909237 - 23909173
Alignment:
Q  124 atgggagggttttcttaaattttaatatgttgttgctattatgatgtgaattttgatgagagaat 188  Q
    ||||||||||| ||||||||||||||| ||||||| | |||||||| ||||||||||||||||||    
T  23909237 atgggagggttgtcttaaattttaataagttgttgttgttatgatgagaattttgatgagagaat 23909173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 75 - 195
Target Start/End: Complemental strand, 13939079 - 13938961
Alignment:
Q  75 ttcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtga-a 173  Q
    ||||||||||| || |||||||||||||||||| |||||||||| ||| || ||| ||| |  |||| | |||| ||||||||| | ||||||||||| |    
T  13939079 ttcgaggtaagaggaagaatctttgcactttagtgtatcttaatatatgat-ggacggtgt--ttaattcttaagatgttgttgttgttatgatgtgaga 13938983  T
Q  174 ttttgatgagagaatgatgatg 195  Q
    ||||||||||||| | ||||||    
T  13938982 ttttgatgagagatttatgatg 13938961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 24761007 - 24760922
Alignment:
Q  11 agcaaagggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 96  Q
    |||| |||||||||| | ||||||||||| | ||||  | || ||||||||||||||||| |||||||||||||| ||| ||||||    
T  24761007 agcatagggagagaacctgaaccctagtgcaacaacaccgagccaaaccgaaggtttctaaggattcgaggtaagagggggaatct 24760922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 122
Target Start/End: Original strand, 25756303 - 25756344
Alignment:
Q  81 gtaagggggagaatctttgcactttagggtatcttaatctat 122  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  25756303 gtaagagggagaatctttgcactttagggtatcttaatctat 25756344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 169
Target Start/End: Original strand, 25581329 - 25581419
Alignment:
Q  79 aggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaa-tatgttgttgctattatgatg 169  Q
    |||||||||||||||||||| |||||||||||||||| |||||| || |||||    |||| |||||||| |||||||||| | ||||||||    
T  25581329 aggtaagggggagaatctttccactttagggtatctt-atctatgattggaggaacgtctttaattttaattatgttgttgttgttatgatg 25581419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 24565027 - 24564983
Alignment:
Q  74 attcgaggtaagggggagaatctttgcactttagggtatcttaat 118  Q
    ||||||||||| ||| | ||||||||||||||||||| |||||||    
T  24565027 attcgaggtaatgggaaaaatctttgcactttagggtctcttaat 24564983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 81 - 195
Target Start/End: Complemental strand, 143216 - 143102
Alignment:
Q  81 gtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaattttgat 180  Q
    ||||||||| |||||||| ||||||| ||||||||||||||| |||||| |||| ||||||||||||| |||||||| || |||||||||||||||||||    
T  143216 gtaagggggtgaatcttttcactttatggtatcttaatctatgatgggaaggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgat 143117  T
Q  181 gagagaatgatgatg 195  Q
    |||||| ||||||||    
T  143116 gagagattgatgatg 143102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 76 - 169
Target Start/End: Complemental strand, 14681 - 14588
Alignment:
Q  76 tcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatg 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||| |||||||||||||| ||||||||    
T  14681 tcgaggtaagggggagaatctttgcactttagggtatcttaatctatgatgggagggttgtctttaatttcaatatgttgttgctgttatgatg 14588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 90 - 195
Target Start/End: Complemental strand, 12060 - 11955
Alignment:
Q  90 agaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaattttgatgagagaatg 189  Q
    ||||| ||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||   |||||||| ||||||||||||||||||||||||||||    
T  12060 agaatatttgcactttagggtatcttaatttatgatgggagggttgtcttaaattttaattcattgttgctgttatgatgtgaattttgatgagagaatg 11961  T
Q  190 atgatg 195  Q
    ||||||    
T  11960 atgatg 11955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 6e-33; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 76 - 195
Target Start/End: Original strand, 19545140 - 19545254
Alignment:
Q  76 tcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaatt 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||| ||     |||||||||||||||||| |||| |||||||||    
T  19545140 tcgaggtaagggggagaatctttgcactttagggtatcttaatctatgatatgagggttgtc-----ttttaatatgttgttgctgttataatgtgaatt 19545234  T
Q  176 ttgatgagagaatgatgatg 195  Q
    ||||||||| ||||||||||    
T  19545235 ttgatgagaaaatgatgatg 19545254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 81 - 195
Target Start/End: Complemental strand, 14746663 - 14746549
Alignment:
Q  81 gtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaattttgat 180  Q
    ||||||||||||||||||||||| |||||||||||||||||| | | || ||||  |||||||||||| |||||||| || |||||||||||||||| ||    
T  14746663 gtaagggggagaatctttgcactatagggtatcttaatctatgaggagaaggttgacttaaattttaaaatgttgttactgttatgatgtgaatttttat 14746564  T
Q  181 gagagaatgatgatg 195  Q
    |||||||||||||||    
T  14746563 gagagaatgatgatg 14746549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 15119086 - 15119009
Alignment:
Q  18 ggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 96  Q
    |||||||||||||||||||||| |||||| || ||  ||| ||||||||||||| |||||||||||||||| |||||||    
T  15119086 ggagagaagcagaaccctagtgcagcaacatcgagctaaatcgaaggtttctac-gattcgaggtaaggggaagaatct 15119009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 26587897 - 26587843
Alignment:
Q  74 attcgaggtaagggggagaatctttgcactttagggtatcttaatctattatggg 128  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||    
T  26587897 attcgaggtaaaggggagaatcttttcactttagggtatcttaatctatgatggg 26587843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 22395459 - 22395512
Alignment:
Q  81 gtaagggggagaatctttgcactttagggtatcttaatctattatgggagggtt 134  Q
    |||||||||||| ||||||||||||||||||||||||| ||| |||||||||||    
T  22395459 gtaagggggagagtctttgcactttagggtatcttaatatatgatgggagggtt 22395512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 128
Target Start/End: Complemental strand, 26588215 - 26588160
Alignment:
Q  73 gattcgaggtaagggggagaatctttgcactttagggtatcttaatctattatggg 128  Q
    |||||||||||||||||||  || || ||||||||||||||||||||||| |||||    
T  26588215 gattcgaggtaagggggaggttcctttcactttagggtatcttaatctatgatggg 26588160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 195
Target Start/End: Original strand, 22395518 - 22395551
Alignment:
Q  162 ttatgatgtgaattttgatgagagaatgatgatg 195  Q
    |||||||||||||||||||||||||| |||||||    
T  22395518 ttatgatgtgaattttgatgagagaaagatgatg 22395551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 81 - 195
Target Start/End: Complemental strand, 15098 - 14984
Alignment:
Q  81 gtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaattttgat 180  Q
    ||||||||||||||||||||||| |||||||||||||||||| | | || ||||  |||||||||||| |||||||| || |||||||||||||||| ||    
T  15098 gtaagggggagaatctttgcactatagggtatcttaatctatgaggagaaggttgacttaaattttaaaatgttgttactgttatgatgtgaatttttat 14999  T
Q  181 gagagaatgatgatg 195  Q
    |||||||||||||||    
T  14998 gagagaatgatgatg 14984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 84 - 184
Target Start/End: Original strand, 11838 - 11938
Alignment:
Q  84 agggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaattttgatgag 183  Q
    ||||||||||||||||||||||||||| || |||| ||| || |||||||| | ||||||||||||||||||||||| ||||||||| ||||||||||||    
T  11838 agggggagaatctttgcactttagggtgtcgtaatttatgataggagggttgtattaaattttaatatgttgttgctgttatgatgtaaattttgatgag 11937  T
Q  184 a 184  Q
    |    
T  11938 a 11938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 64; Significance: 3e-28; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 81 - 195
Target Start/End: Original strand, 516 - 631
Alignment:
Q  81 gtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaa-ttttaatatgttgttgctattatgatgtgaattttga 179  Q
    ||||||||||||||||||||| | ||| |||||||||||||| ||| ||||||| ||||||| |||||| |||||||| || ||||||| |||||||| |    
T  516 gtaagggggagaatctttgcaatgtagagtatcttaatctatgatgagagggttgtcttaaatttttaaaatgttgttactgttatgatatgaattttta 615  T
Q  180 tgagagaatgatgatg 195  Q
    ||||||||||||||||    
T  616 tgagagaatgatgatg 631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 76 - 195
Target Start/End: Original strand, 2496 - 2609
Alignment:
Q  76 tcgaggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaatatgttgttgctattatgatgtgaatt 175  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||  |||||     ||| |||||||||||||||||||  |||||||||||||    
T  2496 tcgaggtaagggggagaatctttgca-tttagggtatcttaatctatgatatgaggg-----ttatattttaatatgttgttgctggtatgatgtgaatt 2589  T
Q  176 ttgatgagagaatgatgatg 195  Q
    |||| |||| ||||||||||    
T  2590 ttgacgagaaaatgatgatg 2609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 79 - 169
Target Start/End: Original strand, 737 - 827
Alignment:
Q  79 aggtaagggggagaatctttgcactttagggtatcttaatctattatgggagggttttcttaaattttaa-tatgttgttgctattatgatg 169  Q
    ||||||||||||||| |||||||||||||||||||||||||||| || |||||||| |||| |||||||| |||||||||||| ||||||||    
T  737 aggtaagggggagaa-ctttgcactttagggtatcttaatctatgattggagggttgtctttaattttaattatgttgttgctgttatgatg 827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0145 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 14823 - 14735
Alignment:
Q  8 agaagcaaagggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 96  Q
    |||||||||| || |||||  |||||||| || |||||| || ||||||||| || |||||||||| ||||||||||||||||||||||    
T  14823 agaagcaaagagaaagaagtggaaccctactgcagcaacatcgagtcaaaccaaatgtttctacgggttcgaggtaagggggagaatct 14735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 3504 - 3419
Alignment:
Q  11 agcaaagggagagaagcagaaccctagtgtagcaacgtcaagtcaaaccgaaggtttctacggattcgaggtaagggggagaatct 96  Q
    |||| |||||||||| | ||||||||||| | ||||  | || ||||||||||||||||| |||||||||||||| ||| ||||||    
T  3504 agcatagggagagaacctgaaccctagtgcaacaacaccgagccaaaccgaaggtttctaaggattcgaggtaagagggggaatct 3419  T

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Target: scaffold0381 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 118
Target Start/End: Original strand, 11515 - 11547
Alignment:
Q  86 ggggagaatctttgcactttagggtatcttaat 118  Q
    |||||||||||||||||||||||||||||||||    
T  11515 ggggagaatctttgcactttagggtatcttaat 11547  T

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Target: scaffold0035 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 113
Target Start/End: Original strand, 15397 - 15438
Alignment:
Q  72 ggattcgaggtaagggggagaatctttgcactttagggtatc 113  Q
    ||||||||||||||||||||| || || ||||||||||||||    
T  15397 ggattcgaggtaagggggagattcctttcactttagggtatc 15438  T

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Target: scaffold0149 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 35468 - 35523
Alignment:
Q  72 ggattcgaggtaagggggagaatctttgcactttagggtatcttaatctattatggg 128  Q
    ||||||||||||||||||||| || |  ||||||||||||| ||||||||| |||||    
T  35468 ggattcgaggtaagggggagattcctaccactttagggtat-ttaatctatgatggg 35523  T

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