View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16343_low_1 (Length: 549)
Name: NF16343_low_1
Description: NF16343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16343_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 22 - 532
Target Start/End: Original strand, 2467521 - 2468028
Alignment:
| Q |
22 |
aaggatgagtgttat-ttaatttaggagggaaagagataacaaagcaaggtgaggtggttggttaatgtgacgcgggacttatccaagaaattggaaaaa |
120 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2467521 |
aaggatgagtgttatgttaatttaggagggaaagagataacaaagcaaggtgaggtggttggttaatgtgacgcgggacttatccaagaaattggaaaaa |
2467620 |
T |
|
| Q |
121 |
gaaaaacagagagcgagctgcgaagcatagcatagcagagttgaagcaacgcagaagaaggaattagaaatgcaatcacactttttctcacattcgctcc |
220 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2467621 |
taaaaacagagagcgagctgcgaagca-----tagcagagttgaagcaacgcagaagaaggaattagaaatgcaatcacactttttctcacattcgctcc |
2467715 |
T |
|
| Q |
221 |
attcgtttccaaaaccatttaagagccagcacttttcatctttcaccacctcacttatatcctcttcca-ttttnnnnnnnntactcctcgctgcaatct |
319 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
2467716 |
attcgtttccaaaaccatttaagagccagcactttttatctttcaccacctcacttatatcctcttccatttttccccctcctactcctcgctgcaatct |
2467815 |
T |
|
| Q |
320 |
caaattaccaccacgctttcaattcaccaacatttttcgggctacaacggtaatttcctgaacctatcttcaacttcatttcattcaattcaatgcctca |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2467816 |
caaattaccaccacgctttcaattcaccaacatttttcggtctacaacggtaatttcctgaacctatcttcaacttcatttcattcaattcaatgcctca |
2467915 |
T |
|
| Q |
420 |
aatttattttcattttcgtatagggattcgttcgtgcttccgaggatgactctgttgccgaaaattccgattctcaatgccaattggcaacacagaatgt |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2467916 |
aatttattttcattttcgtatagggattcgttcgtgcttccgaggatgactctgttgccgaaaattccgattctcaatgccaattggcaacacagaatgt |
2468015 |
T |
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| Q |
520 |
gtcttctgatgat |
532 |
Q |
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||||||||||||| |
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| T |
2468016 |
gtcttctgatgat |
2468028 |
T |
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