View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16343_low_2 (Length: 424)
Name: NF16343_low_2
Description: NF16343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16343_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 5 - 407
Target Start/End: Complemental strand, 13237757 - 13237353
Alignment:
| Q |
5 |
tgaaatgaacatggtcccacataatgtgttgaaa-ctcacgtgaatttcatcaaatataatagtaagtgttgaaaaaagaatgttcttaacattcatctt |
103 |
Q |
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| T |
13237757 |
tgaaatcaacatgaacccacataatgtgttgaaaactcacgtgaatttcatcaaatataataataagtgttgaaaaaagaatattcttaacatttatctt |
13237658 |
T |
|
| Q |
104 |
gatcatattattaagattaacaaattgatatctagatgtacgatgacaaatgacactatcaaagacgaagagcaagcattacattcattggcttcatttc |
203 |
Q |
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| T |
13237657 |
gatcatattatttagattaacaagttgatatctagatgtacaaagacaaatgacactatcaaagatgaagagcaagcattaccttcattggcttcatttc |
13237558 |
T |
|
| Q |
204 |
ccaaattttataaatcactagtgcaatcaatgttagcatgaaaattgcagttagatgaggtgatgagatgagatcgataaaagaaagccaacaaatgatg |
303 |
Q |
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| T |
13237557 |
ccaaattttataaatcactagtgcaatcaatgttagcatgaaaattgcagttagatgaggtgatgagatgagatcgataaaagaaagccaacaaatgatg |
13237458 |
T |
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| Q |
304 |
gatattgataaatcttctcaagacaatcaaatattagtaattaaaggtgggcaacg-nnnnnnntatggtggtcaatatggtaaaatctgcaaccaagat |
402 |
Q |
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| T |
13237457 |
gatattgataaatcttctcaagacaatcaaatattagtaattaaaggtgggcaacgaaaaaaaatatggtggtcaatttggtaaaatctgcaaccaagat |
13237358 |
T |
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| Q |
403 |
atatt |
407 |
Q |
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||||| |
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| T |
13237357 |
atatt |
13237353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 100
Target Start/End: Original strand, 14424107 - 14424136
Alignment:
| Q |
71 |
tgttgaaaaaagaatgttcttaacattcat |
100 |
Q |
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| T |
14424107 |
tgttgaaaaaagaatgttcttaacattcat |
14424136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 102
Target Start/End: Original strand, 9906584 - 9906618
Alignment:
| Q |
68 |
aagtgttgaaaaaagaatgttcttaacattcatct |
102 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
9906584 |
aagtgttgaaaagagaatgttcttaacattcatct |
9906618 |
T |
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