View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16343_low_6 (Length: 249)
Name: NF16343_low_6
Description: NF16343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16343_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 51320385 - 51320528
Alignment:
| Q |
18 |
aaaaatagacatcaaggttcctgtgaaatatatatatagaaatacatacatacataggttgggatgttgttaaacaaacgtaccgtcctcaggagctgat |
117 |
Q |
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| T |
51320385 |
aaaaatagacatcaaggttcctgtgaaatatatagata----tac----atacataggttgggatgttgttaaacaaacgtaccgtcctcaggagctgat |
51320476 |
T |
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| Q |
118 |
gagggaatagtaattgaattgggatttgacataattaaactctggtggtatc |
169 |
Q |
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| T |
51320477 |
gagggaatagtaattgaattgggatttgacataattaaactctggtggtatc |
51320528 |
T |
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Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 51320553 - 51320609
Alignment:
| Q |
182 |
caatgaatctaaatgatggcccgttaagttatttgtacctaatgaatagtgtttctt |
238 |
Q |
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| T |
51320553 |
caatgaatctaaatgatggcccgttaagttatttgtacctaatgaatagtgtttctt |
51320609 |
T |
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