View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16343_low_7 (Length: 225)

Name: NF16343_low_7
Description: NF16343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16343_low_7
NF16343_low_7
[»] chr8 (7 HSPs)
chr8 (16-215)||(1661464-1661662)
chr8 (17-160)||(11144158-11144300)
chr8 (73-156)||(1604132-1604215)
chr8 (73-156)||(11143801-11143884)
chr8 (157-215)||(1604258-1604316)
chr8 (157-215)||(11143700-11143758)
chr8 (16-112)||(44551873-44551967)
[»] chr3 (3 HSPs)
chr3 (16-160)||(55039982-55040125)
chr3 (73-156)||(55040399-55040482)
chr3 (157-215)||(55040525-55040583)
[»] chr7 (4 HSPs)
chr7 (16-160)||(13948038-13948181)
chr7 (157-215)||(13947655-13947713)
chr7 (93-156)||(13947756-13947819)
chr7 (73-126)||(1972595-1972648)
[»] chr1 (12 HSPs)
chr1 (16-160)||(35163403-35163546)
chr1 (16-160)||(29393908-29394051)
chr1 (17-160)||(30402754-30402896)
chr1 (17-160)||(30409311-30409453)
chr1 (73-156)||(29394325-29394408)
chr1 (73-156)||(30403170-30403253)
chr1 (73-156)||(30409727-30409810)
chr1 (73-156)||(35163046-35163129)
chr1 (157-215)||(29394451-29394509)
chr1 (157-215)||(30403296-30403354)
chr1 (157-215)||(30409853-30409911)
chr1 (157-215)||(35162945-35163003)
[»] chr5 (3 HSPs)
chr5 (16-156)||(9260479-9260618)
chr5 (16-156)||(9260842-9260981)
chr5 (157-215)||(9261024-9261082)
[»] chr6 (3 HSPs)
chr6 (157-215)||(2311901-2311959)
chr6 (17-105)||(32445856-32445943)
chr6 (77-112)||(14986967-14987002)
[»] chr4 (3 HSPs)
chr4 (73-126)||(36892665-36892718)
chr4 (164-215)||(46623737-46623788)
chr4 (129-157)||(46623660-46623688)
[»] chr2 (1 HSPs)
chr2 (73-126)||(26450122-26450175)


Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 16 - 215
Target Start/End: Original strand, 1661464 - 1661662
Alignment:
Q  16 caacacagaggcaccacacagccagctgtccctcgagagcacaccatnnnnnnncataaaccacctcgacaaagtccaccaaaactatcactattttctc 115  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||       |||||||||||||||| |||||||||||||||||||||||||||||    
T  1661464 caacacagaggcaccacacagcctgctgtccctcgagagcacaccataaaaaa-cataaaccacctcgacgaagtccaccaaaactatcactattttctc 1661562  T
Q  116 aaaggacaatctttatcaatttatgtaaagtttatttatttatttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1661563 aaaggacaatctttatcaatttatgtaaagtttatttatttatttacatctaatgaaactatatttcatattagttattcacacccattatcgtgatgat 1661662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 160
Target Start/End: Complemental strand, 11144300 - 11144158
Alignment:
Q  17 aacacagaggcaccacacagccagctgtccctcgagagcacaccatnnnnnnncataaaccacctcgacaaagtccaccaaaactatcactattttctca 116  Q
    ||||| |||||||||||||||| ||||||| ||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||    
T  11144300 aacactgaggcaccacacagcctgctgtccttcgagagcacacca-caaaaaacataaaccacctcgacaaagtccaccaaaactatcactattttctca 11144202  T
Q  117 aaggacaatctttatcaatttatgtaaagtttatttatttattt 160  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||    
T  11144201 aaggacagtctttatcaatttatgtaaagtttatttaattattt 11144158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 73 - 156
Target Start/End: Original strand, 1604132 - 1604215
Alignment:
Q  73 aaaccacctcgacaaagtccaccaaaactatcactattttctcaaaggacaatctttatcaatttatgtaaagtttatttattt 156  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1604132 aaaccacatcgacaaagtccaccaaaactatcactattttctcaaaagacaatctttatcaatttatgtaaagtttatttattt 1604215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 73 - 156
Target Start/End: Complemental strand, 11143884 - 11143801
Alignment:
Q  73 aaaccacctcgacaaagtccaccaaaactatcactattttctcaaaggacaatctttatcaatttatgtaaagtttatttattt 156  Q
    ||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11143884 aaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcaatttatgtaaagtttatttattt 11143801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 1604258 - 1604316
Alignment:
Q  157 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1604258 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 1604316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 11143758 - 11143700
Alignment:
Q  157 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11143758 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 11143700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 44551967 - 44551873
Alignment:
Q  16 caacacagaggcaccacacagccagctgtccctcgagagcacaccatnnnnnnncataaaccacctcgacaaagtccaccaaaactatcactatttt 112  Q
    |||||||||||||| |||||||| |||| |||||||||| ||||||        || |||| |||||||||||||||||||||||||||||||||||    
T  44551967 caacacagaggcactacacagcctgctgcccctcgagagaacacca-caaaaaacagaaac-acctcgacaaagtccaccaaaactatcactatttt 44551873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 16 - 160
Target Start/End: Original strand, 55039982 - 55040125
Alignment:
Q  16 caacacagaggcaccacacagccagctgtccctcgagagcacaccatnnnnnnncataaaccacctcgacaaagtccaccaaaactatcactattttctc 115  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||    
T  55039982 caacacagaggcaccacacagcctgctgtccctcgagagcacacca-caaaaaacataaaccacctcgacaaagtccaccaaaactatcactattttctc 55040080  T
Q  116 aaaggacaatctttatcaatttatgtaaagtttatttatttattt 160  Q
    |||||| ||||||||||||||||||||||||||||||||||||||    
T  55040081 aaaggataatctttatcaatttatgtaaagtttatttatttattt 55040125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 73 - 156
Target Start/End: Original strand, 55040399 - 55040482
Alignment:
Q  73 aaaccacctcgacaaagtccaccaaaactatcactattttctcaaaggacaatctttatcaatttatgtaaagtttatttattt 156  Q
    ||||||||||||||||||  ||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  55040399 aaaccacctcgacaaagtataccaaaaatatcactattttctcaaaagacaatcttcatcaatttatgtaaagtttatttattt 55040482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 55040525 - 55040583
Alignment:
Q  157 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 215  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  55040525 atttacatctaatgaaactatatttcatattagttattcacacccattatcgtgatgat 55040583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 5e-52; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 13948181 - 13948038
Alignment:
Q  16 caacacagaggcaccacacagccagctgtccctcgagagcacaccatnnnnnnncataaaccacctcgacaaagtccaccaaaactatcactattttctc 115  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||        ||||||||||||||||||||||| ||||||||||||||||||||||    
T  13948181 caacacagaggcaccacacagcctgctgtccctcgagaacacacca-caaaaaacataaaccacctcgacaaagtcccccaaaactatcactattttctc 13948083  T
Q  116 aaaggacaatctttatcaatttatgtaaagtttatttatttattt 160  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  13948082 aaaggacaatctttatcaatttatgtaaagtttatttatttattt 13948038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 13947713 - 13947655
Alignment:
Q  157 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13947713 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 13947655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 93 - 156
Target Start/End: Complemental strand, 13947819 - 13947756
Alignment:
Q  93 accaaaactatcactattttctcaaaggacaatctttatcaatttatgtaaagtttatttattt 156  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13947819 accaaaactatcattattttctcaaaagacaatctttatcaatttatgtaaagtttatttattt 13947756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 1972648 - 1972595
Alignment:
Q  73 aaaccacctcgacaaagtccaccaaaactatcactattttctcaaaggacaatc 126  Q
    ||||||| |||| ||||||||||||||||| ||||||||||||||  |||||||    
T  1972648 aaaccacttcgaaaaagtccaccaaaactaccactattttctcaacagacaatc 1972595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 5e-52; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 35163546 - 35163403
Alignment:
Q  16 caacacagaggcaccacacagccagctgtccctcgagagcacaccatnnnnnnncataaaccacctcgacaaagtccaccaaaactatcactattttctc 115  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||        |||||||||| |||||||||||||||||||||||||||||||||||    
T  35163546 caacacagaggcaccacacagcctgttgtccctcgagagcacacca-caaaaaacataaaccacttcgacaaagtccaccaaaactatcactattttctc 35163448  T
Q  116 aaaggacaatctttatcaatttatgtaaagtttatttatttattt 160  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  35163447 aaaggacaatctttatcaatttatgtaaagtttatttatttattt 35163403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 16 - 160
Target Start/End: Original strand, 29393908 - 29394051
Alignment:
Q  16 caacacagaggcaccacacagccagctgtccctcgagagcacaccatnnnnnnncataaaccacctcgacaaagtccaccaaaactatcactattttctc 115  Q
    |||||||||||||| ||||| || ||||| ||||||||||||| ||        ||||||||||||||||||||||||||||||||||||||||||||||    
T  29393908 caacacagaggcactacacatcctgctgttcctcgagagcacatca-caaaaaacataaaccacctcgacaaagtccaccaaaactatcactattttctc 29394006  T
Q  116 aaaggacaatctttatcaatttatgtaaagtttatttatttattt 160  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  29394007 aaaggacaatctttatcaatttatgtaaagtttatttatttattt 29394051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 30402754 - 30402896
Alignment:
Q  17 aacacagaggcaccacacagccagctgtccctcgagagcacaccatnnnnnnncataaaccacctcgacaaagtccaccaaaactatcactattttctca 116  Q
    ||||| |||||||||||||||| ||||||| ||||||||||||||        ||||||||||||||||| |||||||||||||||||||||||||||||    
T  30402754 aacactgaggcaccacacagcctgctgtccttcgagagcacacca-caaaaaacataaaccacctcgacagagtccaccaaaactatcactattttctca 30402852  T
Q  117 aaggacaatctttatcaatttatgtaaagtttatttatttattt 160  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||    
T  30402853 aaggacagtctttttcaatttatgtaaagtttatttatttattt 30402896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 30409311 - 30409453
Alignment:
Q  17 aacacagaggcaccacacagccagctgtccctcgagagcacaccatnnnnnnncataaaccacctcgacaaagtccaccaaaactatcactattttctca 116  Q
    ||||| |||||||||||||||| ||||||| ||||||||||||||        ||||||||||||||||| |||||||||||||||||||||||||||||    
T  30409311 aacactgaggcaccacacagcctgctgtccttcgagagcacacca-caaaaaacataaaccacctcgacagagtccaccaaaactatcactattttctca 30409409  T
Q  117 aaggacaatctttatcaatttatgtaaagtttatttatttattt 160  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||    
T  30409410 aaggacagtctttttcaatttatgtaaagtttatttatttattt 30409453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 73 - 156
Target Start/End: Original strand, 29394325 - 29394408
Alignment:
Q  73 aaaccacctcgacaaagtccaccaaaactatcactattttctcaaaggacaatctttatcaatttatgtaaagtttatttattt 156  Q
    ||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29394325 aaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcaatttatgtaaagtttatttattt 29394408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 73 - 156
Target Start/End: Original strand, 30403170 - 30403253
Alignment:
Q  73 aaaccacctcgacaaagtccaccaaaactatcactattttctcaaaggacaatctttatcaatttatgtaaagtttatttattt 156  Q
    ||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30403170 aaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcaatttatgtaaagtttatttattt 30403253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 73 - 156
Target Start/End: Original strand, 30409727 - 30409810
Alignment:
Q  73 aaaccacctcgacaaagtccaccaaaactatcactattttctcaaaggacaatctttatcaatttatgtaaagtttatttattt 156  Q
    ||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30409727 aaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcaatttatgtaaagtttatttattt 30409810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 73 - 156
Target Start/End: Complemental strand, 35163129 - 35163046
Alignment:
Q  73 aaaccacctcgacaaagtccaccaaaactatcactattttctcaaaggacaatctttatcaatttatgtaaagtttatttattt 156  Q
    ||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||    
T  35163129 aaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcactttatgtaaagtttttttattt 35163046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 29394451 - 29394509
Alignment:
Q  157 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29394451 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 29394509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 30403296 - 30403354
Alignment:
Q  157 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30403296 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 30403354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 30409853 - 30409911
Alignment:
Q  157 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30409853 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 30409911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 35163003 - 35162945
Alignment:
Q  157 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35163003 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 35162945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 156
Target Start/End: Original strand, 9260479 - 9260618
Alignment:
Q  16 caacacagaggcaccacacagccagctgtccctcgagagcacaccatnnnnnnncataaaccacctcgacaaagtccaccaaaactatcactattttctc 115  Q
    |||||| ||||||| |||||||| |||||||||||||||||||| |        || |||||||||||||||||||||||||||||||| ||||||||||    
T  9260479 caacaccgaggcactacacagcctgctgtccctcgagagcacacta-caaaaaacaaaaaccacctcgacaaagtccaccaaaactatcgctattttctc 9260577  T
Q  116 aaaggacaatctttatcaatttatgtaaagtttatttattt 156  Q
    ||| |||||||||||||||||||| ||||||||||||||||    
T  9260578 aaaagacaatctttatcaatttatataaagtttatttattt 9260618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 156
Target Start/End: Original strand, 9260842 - 9260981
Alignment:
Q  16 caacacagaggcaccacacagccagctgtccctcgagagcacaccatnnnnnnncataaaccacctcgacaaagtccaccaaaactatcactattttctc 115  Q
    |||||||||||||| |||||||| |||| |||||||||||||||||        || |||||||||||||||| ||||||||||||||||||||||||||    
T  9260842 caacacagaggcactacacagcctgctgcccctcgagagcacacca-caaaaaacagaaaccacctcgacaaaatccaccaaaactatcactattttctc 9260940  T
Q  116 aaaggacaatctttatcaatttatgtaaagtttatttattt 156  Q
    ||  |||||||| ||||||||||||||||||||||||||||    
T  9260941 aacagacaatctctatcaatttatgtaaagtttatttattt 9260981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 9261024 - 9261082
Alignment:
Q  157 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 215  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9261024 atttagatctaatggaactatatttcatattagttattcactcccattatcgtgatgat 9261082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 2311901 - 2311959
Alignment:
Q  157 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 215  Q
    ||||| ||||||||||||||||||| ||||||| ||||||| |||||||||||||||||    
T  2311901 atttagatctaatggaactatatttgatattaggtattcactcccattatcgtgatgat 2311959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 32445943 - 32445856
Alignment:
Q  17 aacacagaggcaccacacagccagctgtccctcgagagcacaccatnnnnnnncataaaccacctcgacaaagtccaccaaaactatca 105  Q
    |||| |||||||| |||||||| |||| |||||||||||||||||        || |||||||||||||||||||||||||||||||||    
T  32445943 aacaaagaggcactacacagcctgctgcccctcgagagcacacca-caaaaaacagaaaccacctcgacaaagtccaccaaaactatca 32445856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 112
Target Start/End: Original strand, 14986967 - 14987002
Alignment:
Q  77 cacctcgacaaagtccaccaaaactatcactatttt 112  Q
    ||||||||||||||||||||||||||||||||||||    
T  14986967 cacctcgacaaagtccaccaaaactatcactatttt 14987002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 36892718 - 36892665
Alignment:
Q  73 aaaccacctcgacaaagtccaccaaaactatcactattttctcaaaggacaatc 126  Q
    ||||||| |||||||||||||||||||||||||||||||||||||  |||||||    
T  36892718 aaaccacttcgacaaagtccaccaaaactatcactattttctcaacagacaatc 36892665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 46623737 - 46623788
Alignment:
Q  164 tctaatggaactatatttcatattagttattcacacccattatcgtgatgat 215  Q
    |||||||||||||||||||||| |||||| ||||||||||||| ||||||||    
T  46623737 tctaatggaactatatttcataatagttaatcacacccattatggtgatgat 46623788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 157
Target Start/End: Original strand, 46623660 - 46623688
Alignment:
Q  129 tatcaatttatgtaaagtttatttattta 157  Q
    |||||||||||||||||||||||||||||    
T  46623660 tatcaatttatgtaaagtttatttattta 46623688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 26450175 - 26450122
Alignment:
Q  73 aaaccacctcgacaaagtccaccaaaactatcactattttctcaaaggacaatc 126  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||  |||||||    
T  26450175 aaaccacttcgacaaagtccaccaaaactaccactattttctcaacagacaatc 26450122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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