View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16344_high_1 (Length: 771)
Name: NF16344_high_1
Description: NF16344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16344_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 693; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 693; E-Value: 0
Query Start/End: Original strand, 16 - 756
Target Start/End: Complemental strand, 28320867 - 28320127
Alignment:
| Q |
16 |
gagaacccaacgataatccaatcaggcagatatcccctcaaatcagccacccatgaaaggctaattgtagttccattcaccgtatttacaacgacgctta |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28320867 |
gagaacccaacgataatccaatcaggcagatatcccctcaaatcagccacccatgaaaggctaattgtagttccattcaccgtatttacaatgacgctta |
28320768 |
T |
|
| Q |
116 |
aagtatcattacgattatcataactaactgtagcaaccaccgttgataaattgctctcaacactatcaattccccatctctccgttgttttggatctgat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||| |
|
|
| T |
28320767 |
aagtatcattacgattatcataactaactgtagcaaccaccgttgataaattgctctcaacactatcaattccccatctctccgttgtttcggaacggat |
28320668 |
T |
|
| Q |
216 |
cgaatttgcattaatacccacatgcgcatatggtgggtcccactcatttgcaaacgtatcgaattcaactgcaacaatttgatttataattggtttaaaa |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28320667 |
ggaatttgcattaatacccacatgcgcatatggtgggtcccactcatttgcaaacgtatcgaattcaactgcaacaatttgatttataattggtttaaaa |
28320568 |
T |
|
| Q |
316 |
gccgtctcggggctgaaaaggccaagatacccaccactcgaagattcagggatcttcgagtgatttggtccggccataaaaaatgcaattccatctcctt |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
28320567 |
gccgtctcggggctgaaaaggccaagatacccaccactcgaagattcagggatcttcgagtgatttggtccagccataaaaaatgcaattccatctcctt |
28320468 |
T |
|
| Q |
416 |
tactttgtccatttgatgttacaagaaaagagaatgtggttgtaaaactagcaagtccaattgtagggtcaaaaaggcgtattggaatagcataagaggc |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
28320467 |
tactttgtccatttgatgttacaagaaaagagaatgtggttgtaaaactagcaagtccaattgcagggtcaaaaaggcgtattggaatagcataagaggc |
28320368 |
T |
|
| Q |
516 |
tctgccaacactaaatggcatgtttatgccgttatttactttagtaagttgaatggtaccatttgattcaacggcatcaccttggtaggtgatgatgtcg |
615 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
28320367 |
tctgccaacactatatggcatgtttatgccgttatttactttagtaagttgaatggtaccatttgattcaacggcatcaccttcgtagttgatgatgtcg |
28320268 |
T |
|
| Q |
616 |
tttatatatggaccggaaaaattcgagagttcaaaagataaatcccaattgcgatgtagcatgaggagtggaagaaggattaagaaaacgggttttgtat |
715 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28320267 |
tttatatatggaccgtaaaaattcgagagttcaaaagataaatcccaattgcgatgtagcatgaggagtggaagaaggattaagaaaacgggttttgtat |
28320168 |
T |
|
| Q |
716 |
tgtatagaggcatggcttgctacaaatttgttagcatgaag |
756 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28320167 |
tgtatagaggcatggctttctacaaatttgttagcatgaag |
28320127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 14 - 749
Target Start/End: Complemental strand, 28316562 - 28315827
Alignment:
| Q |
14 |
cagagaacccaacgataatccaatcaggcagatatcccctcaaatcagccacccatgaaaggctaattgtagttccattcaccgtatttacaacgacgct |
113 |
Q |
| |
|
|||||||||||||||||| ||| || |||||| || ||||||||||| |||| |||||||||||||||||||| |||||||| ||||||||| ||||| |
|
|
| T |
28316562 |
cagagaacccaacgataacccattccggcagaaatgccctcaaatcaatcacctctgaaaggctaattgtagttctattcaccgaatttacaacaacgct |
28316463 |
T |
|
| Q |
114 |
taaagtatcattacgattatcataactaactgtagcaaccaccgttgataaattgctctcaacactatcaattccccatctctccgttgttttggatctg |
213 |
Q |
| |
|
||| | | | || ||||||| ||| ||||||||||||||||| |||| | | ||| |||| |||||||||||||| |||||| | || | |
|
|
| T |
28316462 |
taacctttgtgaaagagcatcataattaattgtagcaaccaccgttgttaaaacgttatcaccactctcaattccccatctttccgtttgtagcgaacga |
28316363 |
T |
|
| Q |
214 |
atcgaatttgcattaatacccacatgcgcatatggtgggtcccactcatttgcaaacgtatcgaattcaactgcaacaatttgatttataattggtttaa |
313 |
Q |
| |
|
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| || |||| |
|
|
| T |
28316362 |
atggaatttatattaatacccacatgcgcatatggtgggtcccactcatttgcaaacgtatcaaattcaacggcaacaatttgattttgaaggctattaa |
28316263 |
T |
|
| Q |
314 |
aagccgtctcggggctgaaaaggccaagatacccaccactcgaagattcagggatcttcgagtgatttggtccggccataaaaaatgcaattccatctcc |
413 |
Q |
| |
|
|||| ||||| || ||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| | || |||||||||||||||||||| |
|
|
| T |
28316262 |
aagcagtctcaggactgaaaaggccaagatacccaccactcgaagattctggaatcttcgagtgattaggtccaacaatgaaaaatgcaattccatctcc |
28316163 |
T |
|
| Q |
414 |
tttactttgtccatttgatgttacaagaaaagagaatgtggttgtaaaactagcaagtccaattgtagggtcaaaaaggcgtattggaatagcataagag |
513 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||| |||| |||||| |||||||| ||||| |||||||||||||||||||| |
|
|
| T |
28316162 |
gacgatttgtccatttgatcttacaataaaagagaatgtggttgtaaaacttacaagaccaattttagggtcataaaggtgtattggaatagcataagag |
28316063 |
T |
|
| Q |
514 |
gctctgccaacactaaatggcatgtttatgccgttatttactttagtaagttgaatggtaccatttgattcaacggcatcaccttggtaggtgatgatgt |
613 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| | |
|
|
| T |
28316062 |
gctctgccaacactaaatggcttgtttatgccgttttctactttagtaagttgaatggtaccatttgatgcaatggcatcaccttggtaggtgatgattt |
28315963 |
T |
|
| Q |
614 |
cgtttatatatggaccggaaaaattcgagagttcaaaagataaatcccaattgcgatgtagcatgaggagtggaagaaggattaagaaaacgggttttgt |
713 |
Q |
| |
|
||||| |||||||||| |||||||||||| |||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28315962 |
cgtttctatatggaccaaaaaaattcgagaattcaaaagataaattccaattatgatggagcatgaggagtggaagaaggattaagaaaacgggttttgt |
28315863 |
T |
|
| Q |
714 |
attgtatagaggcatggcttgctacaaatttgttag |
749 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
28315862 |
attgtatagaggcatggctatctataaatttgttag |
28315827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 217 - 749
Target Start/End: Complemental strand, 28313219 - 28312690
Alignment:
| Q |
217 |
gaatttgcattaatacccacatgcgcatatggtgggtcccactcatttgcaaacgtatcgaattcaactgcaacaatttgatttataattggtttaaaag |
316 |
Q |
| |
|
|||||| ||| |||||||||||||||| || ||||| ||||||| ||| || ||||||||||||||||||||||||||| || | |||||| |
|
|
| T |
28313219 |
gaatttacataaatacccacatgcgcaactgtatggtccagctcattttgaaaggtgtcgaattcaactgcaacaatttgattttgaaaggtattaaaaa |
28313120 |
T |
|
| Q |
317 |
ccgtctcggggctgaaaaggccaagatacccaccactcgaagattcagggatcttcgagtgatttggtccggccataaaaaatgcaattccatctccttt |
416 |
Q |
| |
|
| |||||||| || | ||| |||||||||||| ||||||||||||| | ||||||||||||| |||| || || ||||||| || |||| | || |
|
|
| T |
28313119 |
cagtctcgggactcacaagaccaagatacccatcactcgaagattctgatatcttcgagtgatatggt---gcaatgaaaaatgaaactccaacaccagg |
28313023 |
T |
|
| Q |
417 |
actttgtccatttgatgttacaagaaaagagaatgtggttgtaaaactagcaagtccaattgtagggtcaaaaaggcgtattggaatagcataagaggct |
516 |
Q |
| |
|
||||||| |||| ||||| ||||||||||||||||||||||||||| | ||||| || ||| | ||||| ||||||||||||||| | |||||||||| |
|
|
| T |
28313022 |
actttgttcattcgatgtaacaagaaaagagaatgtggttgtaaaattcgcaagaccgattttggggtcccaaaggcgtattggaagaatataagaggct |
28312923 |
T |
|
| Q |
517 |
ctgccaacactaaatggcatgtttatgccgttatttactttagtaagttgaatggtaccatttgattcaacggcatcaccttggtaggtgatgatgtcgt |
616 |
Q |
| |
|
||||| ||||| | ||||||||| | |||| | || ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28312922 |
ctgcccgcactataaggcatgtttgtatcgttttctatattagtaagttgaatggtgccattagattcaacggcatcaccttggtaggtgatgatgtcgt |
28312823 |
T |
|
| Q |
617 |
ttatatatggaccggaaaaattcgagagttcaaaagataaatcccaattgcgatgtagcatgaggagtggaagaaggattaagaaaacgggttttgtatt |
716 |
Q |
| |
|
|| |||||||||| || ||| | || || || ||| ||| |||||||||| |||||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
28312822 |
ttctatatggaccaaaagcatttgggaatttgaatgatgaatttgaattgcgatgcagcatgaggagtggaataaggattaagaaaacaggttttgtatt |
28312723 |
T |
|
| Q |
717 |
gtatagaggcatggcttgctacaaatttgttag |
749 |
Q |
| |
|
||| |||||||| ||| ||| |||| |||||| |
|
|
| T |
28312722 |
gtacagaggcattgctctctataaatctgttag |
28312690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University