View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16344_high_11 (Length: 250)
Name: NF16344_high_11
Description: NF16344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16344_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 38052134 - 38052371
Alignment:
| Q |
1 |
cctaaacttcaaactcttgaaattttcttcnnnnnnnggttcaacaaaaccttgctctaaaaagtatctccaaaaccgccggattttaaacatagttcca |
100 |
Q |
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| T |
38052134 |
cctaaacttcaaactcttgaaattttcttctttttttggttcaacaaaatctttctctaaaaagtatctccaaaactgccggattttaaacatagttcca |
38052233 |
T |
|
| Q |
101 |
tcaaactttttgatagagtctgaaactaaaatacaaaccataacaaattgtttaaatctctgtaagttgatgttttggtgctctttaaattgggatttaa |
200 |
Q |
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| T |
38052234 |
tcaaactttttgatagagtctgaaactaaaatacaaaccataacaaattgtttaaatctctgtaagttgatgttttggtgctctttaaattgggatttaa |
38052333 |
T |
|
| Q |
201 |
ttatattaaaaagcatacaacctagtgattatgatatt |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
38052334 |
ttatattaaaaagcatacaacctagtgattatgatatt |
38052371 |
T |
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