View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16344_high_5 (Length: 358)
Name: NF16344_high_5
Description: NF16344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16344_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 3 - 342
Target Start/End: Complemental strand, 39119935 - 39119596
Alignment:
| Q |
3 |
tgagaagaatcgggtcacgggcagatacaagtctgcaactttgacagcagtgaaattggtcggcagcataccaaattgtgaagcctttgagagtcgatcg |
102 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
39119935 |
tgagaaaaatcgggtcacgggcagatacaagtctgcaactttgacagcagtgaaattggtcggcagcataccaaattgtgaagcctttgagagtcgaccg |
39119836 |
T |
|
| Q |
103 |
actaccactaatatcactgtttgattttgaaaagaagggagcccaccaccccaatcatttcatctcagcttcaaggtctttctgtaaagaaggctcaatg |
202 |
Q |
| |
|
|| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39119835 |
accaccactaatatcactgtgttattttgaaaagaagggagcccaccaccccaatcatttcatctcagcttcaaggtctttctgtaaagaaggctcaatg |
39119736 |
T |
|
| Q |
203 |
gtcacattcttaattac-nnnnnnnnactatcatcgtttggtcaaataatgtttcttattattcaagaaagaggaaagacaattcaattaaaaatccaac |
301 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39119735 |
gtcacattcttaattactttttttttactatcatcgtttggtc-aataatgtttcttattattcaagaaagaggaaagacaattcaattaaaaatccaac |
39119637 |
T |
|
| Q |
302 |
ataacagttaaccaccagaaacgtaaattttttaaaccttt |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39119636 |
ataacagttaaccaccagaaacgtaaattttttaaaccttt |
39119596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 29 - 311
Target Start/End: Original strand, 38612662 - 38612937
Alignment:
| Q |
29 |
acaagtctgcaactttgacagcagtgaaattggtcggcagcataccaaattgtgaagcctttgagagtcgatcgactaccactaatatcactgtttgatt |
128 |
Q |
| |
|
|||| ||||||||||||||| || |||||||| ||||||| |||||||| ||||||||||||||||||||| |||| |||||||||||||| || ||||| |
|
|
| T |
38612662 |
acaactctgcaactttgacaacattgaaattgatcggcagtataccaaagtgtgaagcctttgagagtcgaccgaccaccactaatatcacagtgtgatt |
38612761 |
T |
|
| Q |
129 |
ttgaaaagaagggagcccaccaccccaatcatttcatctcagcttcaaggtctttctgtaaagaaggctcaatggtcacattcttaattacnnnnnnnna |
228 |
Q |
| |
|
||||||||||||||||||||| || | ||||||||||||||||||||| |||||| ||||| |||| |||||| ||||||||||||||||| | |
|
|
| T |
38612762 |
ttgaaaagaagggagcccaccccctcgatcatttcatctcagcttcaaagtctttatgtaatgaagactcaattgtcacattcttaattactttttttta |
38612861 |
T |
|
| Q |
229 |
ctatcatcgtttggtcaaataatgtttcttattattcaagaaagaggaaagacaattcaattaaaaatccaacataacagtta |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
38612862 |
ctatcatcgtttggtcaaataatgtttcttgttcgacaa-------gaaagacaattcaattaaaaatccaacaaaaccgtta |
38612937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 36 - 311
Target Start/End: Complemental strand, 39117645 - 39117374
Alignment:
| Q |
36 |
tgcaactttgacagcagtgaaattggtcggcagcataccaaattgtgaagcctttgagagtcgatcgactaccactaatatcactgtttgattttgaaaa |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||| |||||||||| |
|
|
| T |
39117645 |
tgcaactttgacagcagtgaaattggtcggcagcataccaaagtgtgaagcctttgagagtcgaccgaccaccactaatatcactgtt--attttgaaaa |
39117548 |
T |
|
| Q |
136 |
gaagggagcccaccaccccaatcatttcatctcagcttcaaggtctttctgtaaagaaggctcaatggtcacattcttaattac--nnnnnnnnactatc |
233 |
Q |
| |
|
|||||||||||||| || | |||||||||||||||||||| |||||||| ||| ||| |||||| ||||||||||||||||| |||||| |
|
|
| T |
39117547 |
gaagggagcccaccccctcggtcatttcatctcagcttcaaagtctttctttaataaagactcaattgtcacattcttaattacttttctttttactatc |
39117448 |
T |
|
| Q |
234 |
atcgtttggtcaaataatgtttcttattattcaagaaagaggaaagacaattcaattaaaaatccaacataacagtta |
311 |
Q |
| |
|
|| ||||||||||||| |||||||| || | ||||||||| ||| ||||| || ||||||||||||||||||||| |
|
|
| T |
39117447 |
attgtttggtcaaatattgtttcttgttctacaagaaaga--aaattcaattaaa--aaaaatccaacataacagtta |
39117374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University