View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16344_high_6 (Length: 347)
Name: NF16344_high_6
Description: NF16344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16344_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 8e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 140 - 329
Target Start/End: Complemental strand, 18719838 - 18719643
Alignment:
| Q |
140 |
gatacatcaaaaaccttccacaatcaaag------tttggaagttgaaaacttaaatttgttttagtattctgctacgttagaaaagatatttatctatg |
233 |
Q |
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| T |
18719838 |
gatacatcaaaaaccttccacaatcaaagccatcgtttggaagttgaaaacttaaatttgttttagtattctgctatgttagaaaatatatttatctatg |
18719739 |
T |
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| Q |
234 |
gatctccttggaagcaatatgtacaatcccaatgaatacagatccaccagagtatgatacaaatcttaataatactgtaagtcacatagacctaac |
329 |
Q |
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| T |
18719738 |
gatctcctttgaagcaatatgtacaatcccaatgaatacagatccaccagagtatgatacaaatcttaataatactgtaagtcacatagacctaac |
18719643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 10 - 142
Target Start/End: Complemental strand, 18720015 - 18719883
Alignment:
| Q |
10 |
attattctccttactgttccatttacttccaaaacattggaaagagaacttttctagtccatcatgtaatatccaaacaatgtatgataattttacttat |
109 |
Q |
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| T |
18720015 |
attattctccttactgttccatttacttccaaaacattggaaagagaacttttctagtccatcatgtaatatccaaacaatgtatgataattttacttat |
18719916 |
T |
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| Q |
110 |
tccttctcattaccattcatatgttaagtagat |
142 |
Q |
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| T |
18719915 |
tccttctcattaccattcatatgttaagtagat |
18719883 |
T |
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