View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16344_low_10 (Length: 334)
Name: NF16344_low_10
Description: NF16344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16344_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 33 - 317
Target Start/End: Original strand, 5911943 - 5912227
Alignment:
| Q |
33 |
tacaaaaaggaagttgtataataatctaatccatcaaaagagaaccagattttctaggatctgtgacattaatcctccaatgataatcaagtgatcccat |
132 |
Q |
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| T |
5911943 |
tacaaaaaggaagttgtataataatctaatccatcaaaagagatccagattttctaggatctgtgacattaatcctccaatgataatcaagtgatcccat |
5912042 |
T |
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| Q |
133 |
cttattagatcttctcctttcccaatttaactcagtcctacgttgtcttgtcaacctacaaaaactttgtaacttcttgtccattctatcatgaaaattc |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5912043 |
cttattagatcttctcctttcccaatttaactcagtcctacgttgtcttgtcaacctacaaaaactttgtaacttcttgtccattctatcatgaaaattc |
5912142 |
T |
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| Q |
233 |
caccaacgttggtgtgccacgtcactagcataaaccctttgatccattacatcccaattgcaatcatagtctctatagcaatgcc |
317 |
Q |
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| T |
5912143 |
caccaacgttggtgtgccacgtcactagcataaaccctttgatccattacatcccaattgcaatcatagtctctatagcaatgcc |
5912227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 45 - 317
Target Start/End: Original strand, 5908075 - 5908347
Alignment:
| Q |
45 |
gttgtataataatctaatccatcaaaagagaaccagattttctaggatctgtgacattaatcctccaatgataatcaagtgatcccatcttattagatct |
144 |
Q |
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||||||||| || |||||||||||| |||| |||| ||||||||||| |||| |||| | |||| |||||||||||||||||||| ||| ||||||| |
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| T |
5908075 |
gttgtataaacatttaatccatcaaatgagagtcagaatttctaggatcaatgactttaaccttccattgataatcaagtgatcccatgttactagatct |
5908174 |
T |
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| Q |
145 |
tctcctttcccaatttaactcagtcctacgttgtcttgtcaacctacaaaaactttgtaacttcttgtccattctatcatgaaaattccaccaacgttgg |
244 |
Q |
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| T |
5908175 |
tctcctttcccaattcaactcagtcctacgttgtcttgtcaacctacaaaaactttgtaaattcttgtccattctatcatgaaaattccaccaacgttgg |
5908274 |
T |
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| Q |
245 |
tgtgccacgtcactagcataaaccctttgatccattacatcccaattgcaatcatagtctctatagcaatgcc |
317 |
Q |
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|| ||||| ||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5908275 |
tgcgccacatcacttgcataaaccctttggtccaccacatcccaattgcaatcatagtctctatagcaatgcc |
5908347 |
T |
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