View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16344_low_12 (Length: 253)
Name: NF16344_low_12
Description: NF16344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16344_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 39119905 - 39120143
Alignment:
| Q |
1 |
cttgtatctgcccgtgacccgatttttctcagtcgttttgggcgttaactgtttcgtcttagtggcacaaagttacgcctgtccactgcgtatcatctag |
100 |
Q |
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| T |
39119905 |
cttgtatctgcccgtgacccgatttttctcagtcattttgggcgttaactgtttcgtcttagtggcacaaagttacgcctgtccactgcgtatcatctag |
39120004 |
T |
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| Q |
101 |
aaagtgatagtagatagaaatcatcaacaaaacgcttcagcagtacttacgatgttttgtgcacgacaagcctaaactctgggggcgatacttac-ttgg |
199 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39120005 |
aaagcgatagtagatagaaatcatcaacaaaacgcttcagcagtacttacgatgttttgtgcacgacaagcctaaactctgggggcgatacttacattgg |
39120104 |
T |
|
| Q |
200 |
gctgagtggcactacaatactgcaagtcactctgccaca |
238 |
Q |
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| T |
39120105 |
gctgagtggcactacgatactgcaagtcactctgccaca |
39120143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 38611664 - 38611421
Alignment:
| Q |
1 |
cttgtatctgcccgtgacccgatttttctcagtcgttttgggcgttaactgtttcgtcttagtggcacaaagttacgcctgtccactgcgtatcatctag |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||| | |
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| T |
38611664 |
cttgtatctgaccgtgacccgatttttctcagtcgtttttggcgttaactgtttcgtcttagtggcacaaagttacgcctggccattgcatatcatccac |
38611565 |
T |
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| Q |
101 |
aaagtgatag-tagatagaaatcatcaacaaaacgcttcagcagtacttacgatgttttgtgcacgacaagcctaaactctgggggcgatacttac-ttg |
198 |
Q |
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| T |
38611564 |
aaagtgatggatagatagaaatcgtcaacaaaacgcttcagcagtacctacggtgttttctgcacgacaagcctaaactctgggggcgatacttacattg |
38611465 |
T |
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| Q |
199 |
ggctgagtggcactacaatactgcaagtcactctgccacaggtt |
242 |
Q |
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| T |
38611464 |
ggccgaatgggactacaatacagcaagtcactctgccacaggtt |
38611421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 6 - 240
Target Start/End: Original strand, 39117700 - 39117937
Alignment:
| Q |
6 |
atctgcccgtgacccgatttttctcagtcgttttgggcgttaactgtttcgtcttagtggcacaaagttacgcctgtccactgcgtatcatctagaaagt |
105 |
Q |
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||||| ||||||||||||||| |||||| ||||| ||||| ||||||||| | |||||||||||||||||||| |||||||||||||||||| | ||||| |
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| T |
39117700 |
atctggccgtgacccgatttt-ctcagttgtttttggcgtgaactgtttcattttagtggcacaaagttacgcttgtccactgcgtatcatccacaaagt |
39117798 |
T |
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| Q |
106 |
gatag-tagatagaaatcatcaacaaaacgcttcagcagtacttacgatgttttgtgcacgacaagcctaaactctgggggcgatac--ttac-ttgggc |
201 |
Q |
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||| | |||||||||||| ||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||| |||| |||| |||| | |
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| T |
39117799 |
gatggatagatagaaatcgtcaacaaaacgtttcagcagtagctacggtgttttgtgcacgacaagcctaaactctgggggcaatacaattacattggtc |
39117898 |
T |
|
| Q |
202 |
tgagtggcactacaatactgcaagtcactctgccacagg |
240 |
Q |
| |
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||||||||| |||||| | |||||||||||||||||| |
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| T |
39117899 |
caagtggcacttcaatacaggaagtcactctgccacagg |
39117937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 158
Target Start/End: Complemental strand, 38612619 - 38612464
Alignment:
| Q |
3 |
tgtatctgcccgtgacccgatttttctcagtcgttttgggcgttaactgtttcgtcttagtggcacaaagttacgcctgtccactgcgtatcatctagaa |
102 |
Q |
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||||||| ||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||| |||| |||| |||||||| | || |
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| T |
38612619 |
tgtatcttaccgtgacccgatttt-ctcagtcgtttttggcgtgaactgtttcgtcttagtggcacaaagttacgcttgtctactgtgtatcatccacaa |
38612521 |
T |
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| Q |
103 |
agtgatag-tagatagaaatcatcaacaaaacgcttcagcagtacttacgatgtttt |
158 |
Q |
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|||||| | ||| |||||||| |||||||||| |||||||||||| |||| |||||| |
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| T |
38612520 |
agtgatggataggtagaaatcgtcaacaaaacacttcagcagtacctacggtgtttt |
38612464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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