View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16344_low_3 (Length: 409)
Name: NF16344_low_3
Description: NF16344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16344_low_3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 8 - 409
Target Start/End: Original strand, 33015952 - 33016353
Alignment:
| Q |
8 |
cgaagaatatagtaacacagaactgctgcaagtttgcttgggaaagaatattgcacgcaccaaagagaacagaagcgagttgatcactttgaatcagcaa |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33015952 |
cgaaaaatatagtaacacagaactgctgcaagtttgcttgggaaagaatattgcacgcaccaaagagaacagaagcgagttgatcactttgaatcagcaa |
33016051 |
T |
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| Q |
108 |
cagactgagctgattccaaaatatccagcttctgcagattgatacagcaaggccgcaagagaaaagaatgtggctggagctttcgttttctgcatcacgg |
207 |
Q |
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| T |
33016052 |
cagactgagctgattccaaaatatccagcttctgcagattgatacagcaaggccgcaagagaaaagaatgtggctggagctttcgttttctgcatcacgg |
33016151 |
T |
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| Q |
208 |
ttaacacaagtgattggacacagaaatctcttctttggctgagctcacggcaagtgccaattaccattcacattagtttcacgagaatgtgtaaaagcat |
307 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33016152 |
ttaacacaagtgattggacacggaaatctcttctttggctgagctcacggcaagtgccaattaccattcacattagtttcacgagaatgtgtaaaagcat |
33016251 |
T |
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| Q |
308 |
ccatgtaaagtctaaaagaggacttgccgccggtgtattttccaactcaaccaattcatacttcttcggccattttctttgaaccccctaaaaggaattg |
407 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33016252 |
ccatgtaaagtctaaaagaggacttgccgccggtgtactttccaactcaaccaattcatacttcttcggccattttcttcgaaccccctaaaaggaattg |
33016351 |
T |
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| Q |
408 |
at |
409 |
Q |
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|| |
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| T |
33016352 |
at |
33016353 |
T |
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