View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16344_low_5 (Length: 362)
Name: NF16344_low_5
Description: NF16344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16344_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 341
Target Start/End: Complemental strand, 49374600 - 49374275
Alignment:
| Q |
16 |
tataattatatccaatccaaataggaaaaacggagggaagggaaagtgaaaggcgggtgaaaagaaaaccgttataaagattagagacgttcgcgtaacc |
115 |
Q |
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| T |
49374600 |
tataattatatccaatccaaataggaaaaacggagggaagggaaagtgaaaggcgggtgaaaagaaaaccgttataaagattagagacgttcgcgtaacc |
49374501 |
T |
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| Q |
116 |
gtcatcaacgtctacgaaacaaacaatattaacgtctttcagaaatcagaattcagatccaagttccatttctagaacgagnnnnnnnnnnnnnnnnnnn |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49374500 |
gtcatcaacgtctacgaaacaaacaatattaacgtctttcagaaatcagaattcagatccaagttccatttctagaacgagtctcttcttcttcttcttc |
49374401 |
T |
|
| Q |
216 |
nnngcgcaatcgaggacgctacgagtgaaatcatgagtgaattgacttcagtatcaaacgagagtcctcggcgatctctgagcattcaactttcttccat |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49374400 |
ttcgcgcaatcgaggacgctacgagtgaaatcatgagtgaattgacttcagtatcaaacgagagtcctcggcgatctctgagcattcaactttcttccat |
49374301 |
T |
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| Q |
316 |
gattatcgtcgatagcactttaccct |
341 |
Q |
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||||||||||||| |||||||||||| |
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| T |
49374300 |
gattatcgtcgattgcactttaccct |
49374275 |
T |
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