View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16344_low_6 (Length: 361)
Name: NF16344_low_6
Description: NF16344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16344_low_6 |
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| [»] scaffold0522 (1 HSPs) |
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| [»] scaffold0309 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 109 - 356
Target Start/End: Complemental strand, 11312785 - 11312538
Alignment:
| Q |
109 |
ggcttaacaggaaccgaaggcttaaaagcatcaagttcttgaagagttgtttcaaactcttcagcaaatggagtgaaaaaggttagttggagtatgagta |
208 |
Q |
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| T |
11312785 |
ggcttaacaggaaccgaaggcttaaaagcatcaagttcttgaagagttgtttcaaactcttcagcaaatggagtgaaaaaggttagttggagtatgagca |
11312686 |
T |
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| Q |
209 |
tcaacaatgctaaaaaatttcccatttttctatgtaagacgatgtaaccttgaannnnnnnnnnnnnnnntggaaatgatgttggtgttgggggatgttg |
308 |
Q |
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| T |
11312685 |
tcaacaatgctaaaaaatttcccatttttctatgtaagacgatgtaaccttgaaagagagagagagagagtggaaatgatgttggtgttgggggatgttg |
11312586 |
T |
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| Q |
309 |
tgaaaaagtgatcatgagagttctttatttataggagatgatgtccat |
356 |
Q |
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| T |
11312585 |
tgaaaaagtgattatgagggttctttatttataggagttgatgtccat |
11312538 |
T |
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Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 130 - 223
Target Start/End: Complemental strand, 21471585 - 21471492
Alignment:
| Q |
130 |
ttaaaagcatcaagttcttgaagagttgtttcaaactcttcagcaaatggagtgaaaaaggttagttggagtatgagtatcaacaatgctaaaa |
223 |
Q |
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| T |
21471585 |
ttaaaaccatcaagttcgtaaagagctgtttcaaactcttcagcaaatgaagtgaaaaatggtagttggagtaaaagtagcaacagtgcaaaaa |
21471492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0522 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0522
Description:
Target: scaffold0522; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 214
Target Start/End: Original strand, 1108 - 1192
Alignment:
| Q |
130 |
ttaaaagcatcaagttcttgaagagttgtttcaaactcttcagcaaatggagtgaaaaaggttagttggagtatgagtatcaaca |
214 |
Q |
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| T |
1108 |
ttaaaaccatcaagttcgtaaagagctgtgtcaaactcttcagcaaatgaagtgaaaaatgctagttggagtaagagtagcaaca |
1192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0309 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0309
Description:
Target: scaffold0309; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 130 - 223
Target Start/End: Complemental strand, 3919 - 3826
Alignment:
| Q |
130 |
ttaaaagcatcaagttcttgaagagttgtttcaaactcttcagcaaatggagtgaaaaaggttagttggagtatgagtatcaacaatgctaaaa |
223 |
Q |
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| T |
3919 |
ttaaaaccatcaagttcgtaaagagctgtatcaaactcttcagtaaatgaagtgaaaaatgctagttggagtaggagtagcaacagtgcaaaaa |
3826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 19262750 - 19262847
Alignment:
| Q |
124 |
gaaggcttaaaagcatcaagttcttgaagagttgtttcaaactcttcagcaaatggagtgaaaaaggttagttggagtatgagtatcaacaatgctaa |
221 |
Q |
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| T |
19262750 |
gaaggcttaaaaccataaggtttgtaaagagcggtttcaagctcttccgcaaatgtagtgaaaaaggttagttgaagtaagagtaacaacaatgctaa |
19262847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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