View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16345_high_9 (Length: 259)
Name: NF16345_high_9
Description: NF16345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16345_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 8 - 243
Target Start/End: Original strand, 33426059 - 33426298
Alignment:
| Q |
8 |
aagcataggttggagtgattgactgtttattaggtattattatttaaaaaataataat-ttaatgatgtgtacaagtgtgacgtatttaggtaccnnnnn |
106 |
Q |
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| T |
33426059 |
aagcttaggttggagtgattgactgtttattaggtattattattttttttttaaaaaaattagtgatgtgtacaaatttgacgtatttaggtaccaaaaa |
33426158 |
T |
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| Q |
107 |
nn-tgagtgtatgtggatcctctaagaatacttgtgagaaaaacccttattaaattgatatgaattgaatcttcaagtt--cctcatataattaattgtt |
203 |
Q |
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| T |
33426159 |
aaatgagtgtatgtgaatcctctaagaatacttgtgagaaaaacccttattaaattaatatgaattgaatcttcaagtttctctcatatcattaattatt |
33426258 |
T |
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| Q |
204 |
tagtcataaccatactgaaagttaattagactcaaccaac |
243 |
Q |
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| T |
33426259 |
tagtcataaccatagtgaaagttaattagactcaaccaac |
33426298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 32451797 - 32451736
Alignment:
| Q |
16 |
gttggagtgattgactgtttattaggtattattatttaaaaaataataatttaatgatgtgta |
78 |
Q |
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| T |
32451797 |
gttggagtgattgaatgcttattaggtattacta-ttaaaaaattataaattagtgatgtgta |
32451736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 46487062 - 46487103
Alignment:
| Q |
16 |
gttggagtgattgactgtttattaggtattattatttaaaaa |
57 |
Q |
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| T |
46487062 |
gttggagggattgagtgtttattaggtattattattaaaaaa |
46487103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 35539674 - 35539738
Alignment:
| Q |
15 |
ggttggagtgattgactgtttattaggtattattatttaaaaaataataatttaatgatgtgtaca |
80 |
Q |
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| T |
35539674 |
ggttggagtgatcgagtgtttattaggtactacta-ttaaaaaattataaataaatgatgtgtaca |
35539738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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