View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16345_low_3 (Length: 376)

Name: NF16345_low_3
Description: NF16345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16345_low_3
NF16345_low_3
[»] chr3 (36 HSPs)
chr3 (41-331)||(10034938-10035228)
chr3 (41-302)||(10430914-10431175)
chr3 (41-331)||(10520420-10520710)
chr3 (41-331)||(9980401-9980691)
chr3 (61-331)||(9852832-9853102)
chr3 (43-315)||(10129859-10130125)
chr3 (51-331)||(10263646-10263926)
chr3 (61-331)||(9841813-9842083)
chr3 (68-313)||(10666497-10666742)
chr3 (42-303)||(11772170-11772430)
chr3 (42-303)||(11778855-11779115)
chr3 (61-317)||(10360658-10360915)
chr3 (68-331)||(10583544-10583808)
chr3 (121-317)||(10372768-10372965)
chr3 (61-315)||(10531736-10531989)
chr3 (61-257)||(10091950-10092146)
chr3 (61-257)||(10198832-10199028)
chr3 (121-313)||(10503666-10503857)
chr3 (61-258)||(10680534-10680731)
chr3 (51-159)||(10583458-10583566)
chr3 (50-285)||(10086119-10086354)
chr3 (50-285)||(10193039-10193274)
chr3 (61-108)||(10503537-10503584)
chr3 (68-146)||(10091888-10091966)
chr3 (68-146)||(10198770-10198848)
chr3 (329-370)||(9980724-9980765)
chr3 (329-370)||(10035261-10035302)
chr3 (329-370)||(10130173-10130214)
chr3 (329-370)||(10263959-10264000)
chr3 (329-370)||(10430718-10430759)
chr3 (68-102)||(10091750-10091784)
chr3 (68-102)||(10198632-10198666)
chr3 (197-248)||(11242500-11242551)
chr3 (61-99)||(10091812-10091850)
chr3 (61-99)||(10198694-10198732)
chr3 (68-113)||(9852701-9852746)
[»] scaffold0083 (2 HSPs)
scaffold0083 (41-331)||(54446-54736)
scaffold0083 (329-370)||(54372-54413)
[»] chr4 (1 HSPs)
chr4 (59-258)||(17849840-17850039)
[»] chr2 (1 HSPs)
chr2 (68-283)||(26909850-26910065)
[»] chr8 (2 HSPs)
chr8 (61-243)||(44954592-44954773)
chr8 (121-171)||(11488114-11488164)


Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 41 - 331
Target Start/End: Original strand, 10034938 - 10035228
Alignment:
Q  41 gtttttggtattgtcataaacttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcatt 140  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||| | ||| ||||||||||||||||    
T  10034938 gtttttggaattgtcatcaacttgagacattgccagaaaactgcctcccttcctcgctgaaatcacttagattgtgggattgtaaaaagcttgagtcatt 10035037  T
Q  141 accagaagacagcctccctgactctcttaagcaactgtccattgtgcgatgtccattgttagtagaaaggtataaaaggaaggaacattggtccaaaatt 240  Q
    |||||||||||||||| |||||||||||| | |||| | ||||  |   || |||||||||| |||||||||||||||||||||||||||||||||||||    
T  10035038 accagaagacagcctcactgactctcttagggaactctgcatttggaattgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaatt 10035137  T
Q  241 gctcacatccctttcatatatatcaatgaagaagtcacaatatgatagacaagttgtgttcccatttcaggtatgttccacagttcctacc 331  Q
    |||||||||||||||||| |||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10035138 gctcacatccctttcatagatataaatcatgaagtcacaatatgatagacaagttgtgttcccatttcaggtatgttccacagttcctacc 10035228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 41 - 302
Target Start/End: Complemental strand, 10431175 - 10430914
Alignment:
Q  41 gtttttggtattgtcataaacttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcatt 140  Q
    ||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||    
T  10431175 gtttttggttttgtgatcaacttgagacattgccagaaaactgcctcccttcctcgctgaaatcacttgatttgtggaaatgtgaaaagcttgagtcatt 10431076  T
Q  141 accagaagacagcctccctgactctcttaagcaactgtccattgtgcgatgtccattgttagtagaaaggtataaaaggaaggaacattggtccaaaatt 240  Q
    |||||||||||||||||||||||||||||||||||||   |||  |  |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10431075 accagaagacagcctccctgactctcttaagcaactgagaattagggaatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaatt 10430976  T
Q  241 gctcacatccctttcatatatatcaatgaagaagtcacaatatgatagacaagttgtgttcc 302  Q
    |||||||||||| ||||| |||| ||||| ||||||||||||||||||||||||||||||||    
T  10430975 gctcacatccctgtcatagatataaatgatgaagtcacaatatgatagacaagttgtgttcc 10430914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 41 - 331
Target Start/End: Original strand, 10520420 - 10520710
Alignment:
Q  41 gtttttggtattgtcataaacttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcatt 140  Q
    |||||||| ||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| | |||||    
T  10520420 gtttttgggattgtgaacaacttgagacattgccagaaaactgcctcccttcctcgctgaaattacttgatttgtggaaatgtgaaaagcttaaatcatt 10520519  T
Q  141 accagaagacagcctccctgactctcttaagcaactgtccattgtgcgatgtccattgttagtagaaaggtataaaaggaaggaacattggtccaaaatt 240  Q
    ||||||||||||||||||||||||||| |||  ||||  ||||  |  |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10520520 accagaagacagcctccctgactctctgaagagactgctcatttgggaatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaatt 10520619  T
Q  241 gctcacatccctttcatatatatcaatgaagaagtcacaatatgatagacaagttgtgttcccatttcaggtatgttccacagttcctacc 331  Q
    |||||||||||  ||||||  || ||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10520620 gctcacatcccagtcatatcaataaattaccaagtcacaatatgatagacaagttgtgttcccatttcaggtatgttccacagttcctacc 10520710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 41 - 331
Target Start/End: Original strand, 9980401 - 9980691
Alignment:
Q  41 gtttttggtattgtcataaacttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcatt 140  Q
    |||||| || ||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |   | ||| ||||||| ||||||||    
T  9980401 gttttttgttttgtcaacaacttgagacattgccagaaaactgcctcccttcctcgctgaaatcacttgaattttatgattgtaaaaagctagagtcatt 9980500  T
Q  141 accagaagacagcctccctgactctcttaagcaactgtccattgtgcgatgtccattgttagtagaaaggtataaaaggaaggaacattggtccaaaatt 240  Q
    ||||||||||||||||||||| ||||||||| |||||| ||| |   | || |||||||||| |||||||||||||||||||||||||||||||||||||    
T  9980501 accagaagacagcctccctgaatctcttaaggaactgtacatcgatggttgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaatt 9980600  T
Q  241 gctcacatccctttcatatatatcaatgaagaagtcacaatatgatagacaagttgtgttcccatttcaggtatgttccacagttcctacc 331  Q
    |||||||||||| ||||||  || ||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9980601 gctcacatccctgtcatatcaataaattacaaagtcacaatatgatagacaagttgtgttcccatttcaggtatgttccacagttcctacc 9980691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 61 - 331
Target Start/End: Original strand, 9852832 - 9853102
Alignment:
Q  61 cttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctg 160  Q
    |||||| |||| ||||||||||||||||| || |||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9852832 cttgagtcattaccagaaaactgcctcccatcatcgctgaaatcacttgaattgtggaaatgtgaaaagctagagtcattaccagaagacagcctccctg 9852931  T
Q  161 actctcttaagcaactgtccattgtgcgatgtccattgttagtagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctttcatata 260  Q
    |||| || |||  ||||  ||||    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  9852932 actcactgaagagactggacatttatggatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcataga 9853031  T
Q  261 tatcaatgaagaagtcacaatatgatagacaagttgtgttcccatttcaggtatgttccacagttcctacc 331  Q
     || |||||  | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9853032 aataaatgaccaggttacaatatgatagacaagttgtgttcccatttcaggtatgttccacagttcctacc 9853102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 43 - 315
Target Start/End: Original strand, 10129859 - 10130125
Alignment:
Q  43 ttttggtattgtcataaacttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattac 142  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| | || ||| | ||||||||||| ||||||||||    
T  10129859 ttttggaattgtcatcaacttgagacattgccagaaaactgcctcccttcctcgctgaaatcacttgacttttgggattgtgaaaagctagagtcattac 10129958  T
Q  143 cagaagacagcctccctgactctcttaagcaactgtccattgtgcgatgtccattgttagtagaaaggtataaaaggaaggaacattggtccaaaattgc 242  Q
    ||||||||||||||||||| ||||||| |||||||| ||||    ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  10129959 cagaagacagcctccctgattctcttatgcaactgtgcattcaaggatgtccattgttagaagaaaggtataaaaggaaggaacattgctccaaaattgc 10130058  T
Q  243 tcacatccctttcatatatatcaatgaagaagtcacaatatgatagacaagttgtgttcccatttcaggtatg 315  Q
    |||||||||||||| | ||||||      ||| ||||||||||||||||||||||||||||||||||||||||    
T  10130059 tcacatccctttcaaaaatatca------aaggcacaatatgatagacaagttgtgttcccatttcaggtatg 10130125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 51 - 331
Target Start/End: Original strand, 10263646 - 10263926
Alignment:
Q  51 ttgtcataaacttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagac 150  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||     |||||||||||| ||||||||||||||||||    
T  10263646 ttgtcatcaacttgagacattgccagaaaactgcctcccttcctcgctgaaatcacttctattgcttggatgtgaaaagctagagtcattaccagaagac 10263745  T
Q  151 agcctccctgactctcttaagcaactgtccattgtgcgatgtccattgttagtagaaaggtataaaaggaaggaacattggtccaaaattgctcacatcc 250  Q
    |||||||||  ||||||||| | |||  | || | |   || |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  10263746 agcctcccttcctctcttaaactactcgctatcgagttttgcccattgttagaagaaaggtataaaaggaaggaacattagtccaaaattgctcacatcc 10263845  T
Q  251 ctttcatatatatcaatgaagaagtcacaatatgatagacaagttgtgttcccatttcaggtatgttccacagttcctacc 331  Q
    ||||||||   || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10263846 ctttcataagaataaatgatgaagtcacaatatgatagacaagttgtgttcccatttcaggtatgttccacagttcctacc 10263926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 61 - 331
Target Start/End: Original strand, 9841813 - 9842083
Alignment:
Q  61 cttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctg 160  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||  |||||   ||||||||||||||||||||||||||||||||||||||||||    
T  9841813 cttgagtcattgccagaaaactgcctcccttcctcgctgaaatcacttatattgtttcaatgtgaaaagcttgagtcattaccagaagacagcctccctg 9841912  T
Q  161 actctcttaagcaactgtccattgtgcgatgtccattgttagtagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctttcatata 260  Q
    |||||||| |||  |||  ||||  | ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||     
T  9841913 actctcttgagcgtctgaacatttggggatgtccattgttagaagaaaggtataaaaggaaggaacattgctccaaaattgctcacatccctgtcatatg 9842012  T
Q  261 tatcaatgaagaagtcacaatatgatagacaagttgtgttcccatttcaggtatgttccacagttcctacc 331  Q
     || ||  |  |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9842013 gataaaccaccaagtcagaatatgatagacaagttgtgttcccgtttcaggtatgttccacagttcctacc 9842083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 68 - 313
Target Start/End: Original strand, 10666497 - 10666742
Alignment:
Q  68 cattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctct 167  Q
    |||| |||||| || ||||||||||||||||||||| |||| ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10666497 cattaccagaagacagcctcccttcctcgctgaaatcacttgaattgtttgaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctct 10666596  T
Q  168 taagcaactgtccattgtgcgatgtccattgttagtagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctttcatatatatcaat 267  Q
    |||| |||||  ||||| |  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  || |||    
T  10666597 taaggaactgcacattgaggaatgtccattgttagaagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctgtcatatcaataaat 10666696  T
Q  268 gaagaagtcacaatatgatagacaagttgtgttcccatttcaggta 313  Q
     |  ||||||||||||||||||| |||||||||||  |||||||||    
T  10666697 tacaaagtcacaatatgatagacgagttgtgttcctgtttcaggta 10666742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 42 - 303
Target Start/End: Original strand, 11772170 - 11772430
Alignment:
Q  42 tttttggtattgtcataaacttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcatta 141  Q
    ||||||| |||||||  | || ||| ||||||||||||||||||||||||||||| |||||| ||||  |||    |  |||||  ||||||||||||||    
T  11772170 tttttggaattgtcaacagctcgagtcattgccagaaaactgcctcccttcctcgttgaaatcactttcatttcaaatgtgtgaggagcttgagtcatta 11772269  T
Q  142 ccagaagacagcctccctgactctcttaagcaactgtccattgtgcgatgtccattgttagtagaaaggtataaaaggaaggaacattggtccaaaattg 241  Q
    || |||||||||||||| |||||||||||||||||| |||||  | |||| |||||||||| |||||||||||||||||| ||||||||||||||||| |    
T  11772270 ccggaagacagcctccccgactctcttaagcaactgaccatttggggatgcccattgttagaagaaaggtataaaaggaaagaacattggtccaaaatcg 11772369  T
Q  242 ctcacatccctttcatatatatcaatgaagaagtcacaatatgatagacaagttgtgttccc 303  Q
    ||||||||||| ||||| |||| |||||| |||||||||||||| | ||||| |||||||||    
T  11772370 ctcacatccctgtcatagatataaatgaaaaagtcacaatatgaga-acaagctgtgttccc 11772430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 42 - 303
Target Start/End: Complemental strand, 11779115 - 11778855
Alignment:
Q  42 tttttggtattgtcataaacttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcatta 141  Q
    ||||||| |||||||  | || ||| ||||||||||||||||||||||||||||| |||||| ||||  |||    |  |||||  ||||||||||||||    
T  11779115 tttttggaattgtcaacagctcgagtcattgccagaaaactgcctcccttcctcgttgaaatcactttcatttcaaatgtgtgaggagcttgagtcatta 11779016  T
Q  142 ccagaagacagcctccctgactctcttaagcaactgtccattgtgcgatgtccattgttagtagaaaggtataaaaggaaggaacattggtccaaaattg 241  Q
    || |||||||||||||| |||||||||||||||||| |||||  | |||| |||||||||| |||||||||||||||||| ||||||||||||||||| |    
T  11779015 ccggaagacagcctccccgactctcttaagcaactgaccatttggggatgcccattgttagaagaaaggtataaaaggaaagaacattggtccaaaatcg 11778916  T
Q  242 ctcacatccctttcatatatatcaatgaagaagtcacaatatgatagacaagttgtgttccc 303  Q
    ||||||||||| ||||| | || |||||| |||||||||||||| | ||||| |||||||||    
T  11778915 ctcacatccctgtcatagaaataaatgaaaaagtcacaatatgaga-acaagctgtgttccc 11778855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 61 - 317
Target Start/End: Complemental strand, 10360915 - 10360658
Alignment:
Q  61 cttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctg 160  Q
    |||||| |||| ||||||||||||||||||||||||||||||| ||||  ||| |     |||||||||||| | |||||||||||||||||||||||||    
T  10360915 cttgagtcattaccagaaaactgcctcccttcctcgctgaaatcacttacattttatggttgtgaaaagcttaaatcattaccagaagacagcctccctg 10360816  T
Q  161 actctcttaagcaactgtccattgtgcgat-gtccattgttagtagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctttcatat 259  Q
    ||||||||||| |||||  |||  |  ||| | |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||  |||||     
T  10360815 actctcttaaggaactggacatc-tatgattgcccattgttagaagaaaggtataaaaggaaggaacattgctccaaaattgctcacatccccgtcataa 10360717  T
Q  260 atatcaatgaagaagtcacaatatgatagacaagttgtgttccc-atttcaggtatgtt 317  Q
    | || || ||  ||||||||||||||||||||||||||||||||  |||||||||||||    
T  10360716 aaataaacgaccaagtcacaatatgatagacaagttgtgttcccgttttcaggtatgtt 10360658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 68 - 331
Target Start/End: Original strand, 10583544 - 10583808
Alignment:
Q  68 cattgccagaaaactgcctcccttcctcgctgaaattacttcaatt-gtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctc 166  Q
    |||| |||||| || ||||||||||||||||||||| ||||||||| ||||   |||| ||  || ||||||||||||||||||||||||||||||||||    
T  10583544 cattaccagaagacagcctcccttcctcgctgaaatcacttcaatttgtgggt-tgtgtaagactcgagtcattaccagaagacagcctccctgactctc 10583642  T
Q  167 ttaagcaactgtccattgtgcgatgtccattgttagtagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctttcatatatatcaa 266  Q
    || ||| |||| ||||       || |||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| | || ||    
T  10583643 ttgagcgactgaccatccaattttgcccattgttagaagaaaggtataaaaggaatgaatattggtccaaaattgctcacatccctgtcatacaaataaa 10583742  T
Q  267 tgaagaagtcacaatatgatagacaagttgtgttccc-atttcaggtatgttccacagttcctacc 331  Q
    | |  ||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||    
T  10583743 tcacaaagtcacaatatgatagacaagttgtgttcccgttttcaggtatgttccacatttcctacc 10583808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 121 - 317
Target Start/End: Complemental strand, 10372965 - 10372768
Alignment:
Q  121 tgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaagcaactgtccattgtgcgatgtccattgttagtagaaaggtataaaagga 220  Q
    |||||||||||||||||||||||||||||||||||||||  |||||| |||  ||||  |||| || |||| |||||||||| |||||||||||||||||    
T  10372965 tgtgaaaagcttgagtcattaccagaagacagcctcccttcctctctgaagagactggtcattatgggatgcccattgttagaagaaaggtataaaagga 10372866  T
Q  221 aggaacattggtccaaaattgctcacatccctttcatatatatcaatgaagaagtcacaatatgatagacaagttgtgttccc-atttcaggtatgtt 317  Q
    |||||||||||||||||||||||||||||||  ||||| | || || ||  || |||||||||||||||||||||||||||||  |||||||||||||    
T  10372865 aggaacattggtccaaaattgctcacatccccgtcataaaaataaacgaccaaatcacaatatgatagacaagttgtgttcccgttttcaggtatgtt 10372768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 61 - 315
Target Start/End: Original strand, 10531736 - 10531989
Alignment:
Q  61 cttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctg 160  Q
    |||||| ||||||||||||| |||||||||||||||||||| | ||||||||| | ||  |||| ||  ||||||||||||||||||||||||||||||     
T  10531736 cttgagtcattgccagaaaattgcctcccttcctcgctgaagtcacttcaattttcgagttgtgtaagacttgagtcattaccagaagacagcctccctt 10531835  T
Q  161 actctcttaagcaactgtccattgtgcgatgtccattgttagtagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctttcatata 260  Q
     ||||||||| | |||  | || | |   || |||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| |    
T  10531836 cctctcttaaactactcactatcgagttttgcccattgttagaagaaaggtataaaaggaaggaaaattggtccaaaatttctcacatccctgtcata-a 10531934  T
Q  261 tatcaatgaag-aagtcacaatatgatagacaagttgtgttcccatttcaggtatg 315  Q
    ||  ||  ||| |||| ||||||||| ||||||||||||||||| |||||||||||    
T  10531935 taataaacaagcaagttacaatatga-agacaagttgtgttcccgtttcaggtatg 10531989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 61 - 257
Target Start/End: Original strand, 10091950 - 10092146
Alignment:
Q  61 cttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctg 160  Q
    |||||| |||| ||||| ||||||||||| ||||||||||||| ||||  |||| |  | ||| ||| |||||| ||||||||||||||||||||||||     
T  10091950 cttgagtcatttccagacaactgcctcccgtcctcgctgaaatcacttagattgagtgattgtaaaatgcttgattcattaccagaagacagcctccctt 10092049  T
Q  161 actctcttaagcaactgtccattgtgcgatgtccattgttagtagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctttcat 257  Q
      |||||||     |||| |||| || |||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  10092050 catctcttatcactctgtacattatgggatgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaatttctcacatccctgtcat 10092146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 61 - 257
Target Start/End: Original strand, 10198832 - 10199028
Alignment:
Q  61 cttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctg 160  Q
    |||||| |||| ||||| ||||||||||| ||||||||||||| ||||  |||| |  | ||| ||| |||||| ||||||||||||||||||||||||     
T  10198832 cttgagtcatttccagacaactgcctcccgtcctcgctgaaatcacttagattgagtgattgtaaaatgcttgattcattaccagaagacagcctccctt 10198931  T
Q  161 actctcttaagcaactgtccattgtgcgatgtccattgttagtagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctttcat 257  Q
      |||||||     |||| |||| || |||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  10198932 catctcttatcactctgtacattatgggatgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaatttctcacatccctgtcat 10199028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 121 - 313
Target Start/End: Original strand, 10503666 - 10503857
Alignment:
Q  121 tgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaagcaactgtccattgtgcgatgtccattgttagtagaaaggtataaaagga 220  Q
    |||||||||||| | |||||||||||||||||||| ||||| |||||||||| ||||  ||||    |||| |||   |||| |||||||||||||||||    
T  10503666 tgtgaaaagctttactcattaccagaagacagccttcctgattctcttaagctactgatcattcaaagatgcccaacattagaagaaaggtataaaagga 10503765  T
Q  221 aggaacattggtccaaaattgctcacatccctttcatatatatcaatgaagaagtcacaatatgatagacaagttgtgttcccatttcaggta 313  Q
    |||||||||||||||||||| ||||||||||| ||||| | ||  ||| | ||||||||||||||  |||| | ||||||||| |||||||||    
T  10503766 aggaacattggtccaaaatttctcacatccctgtcatagaaatagatggacaagtcacaatatga-ggacaggctgtgttcccgtttcaggta 10503857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 61 - 258
Target Start/End: Original strand, 10680534 - 10680731
Alignment:
Q  61 cttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctg 160  Q
    |||||| |||| |||||||| |||||||||||||||||||||| ||||||||| | ||  |||| ||  |||||||  |||||||||||||||||||||     
T  10680534 cttgagtcatttccagaaaattgcctcccttcctcgctgaaatcacttcaatttttgagttgtgtaagacttgagttgttaccagaagacagcctccctt 10680633  T
Q  161 actctcttaagcaactgtccattgtgcgatgtccattgttagtagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctttcata 258  Q
     ||||||||| | |||  | ||   |   || |||||||||| |||||||||||||||||| |||||| ||||||||||| ||||||||||| |||||    
T  10680634 cctctcttaaactactcactatcaagttttgcccattgttagaagaaaggtataaaaggaatgaacatcggtccaaaatttctcacatccctgtcata 10680731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 51 - 159
Target Start/End: Original strand, 10583458 - 10583566
Alignment:
Q  51 ttgtcataaacttgagacattgccagaaaactgcctcccttcctcgctgaaattac-ttcaattgtggaaatgtgaaaagcttgagtcattaccagaaga 149  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||| || |||| || ||| | ||||||||||||| |||||||||||||||    
T  10583458 ttgtcatcaacttgagacattgccagaaaactgcctcccttcctcactgaaatcactttcatttatgg-attgtgaaaagcttgggtcattaccagaaga 10583556  T
Q  150 cagcctccct 159  Q
    ||||||||||    
T  10583557 cagcctccct 10583566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 50 - 285
Target Start/End: Original strand, 10086119 - 10086354
Alignment:
Q  50 attgtcataaacttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaaga 149  Q
    |||||||  |||||||| |||| || ||||| ||| | |||||||||||||||| |||| || | ||||  |||||||  ||||| |||||||| |||||    
T  10086119 attgtcaacaacttgagccatttcctgaaaattgcgttccttcctcgctgaaatcacttgaaatttggagttgtgaaagacttgaatcattaccggaaga 10086218  T
Q  150 cagcctccctgactctcttaagcaactgtccattgtgcgatgtccattgttagtagaaaggtataaaaggaaggaacattggtccaaaattgctcacatc 249  Q
    | |||||||||| ||||| ||||  |||  ||| ||    |  || ||||||  ||||||||||||||||||||||||||||||||||||| ||| |||     
T  10086219 ctgcctccctgattctctgaagcgtctgagcatcgtatttttccctttgttaaaagaaaggtataaaaggaaggaacattggtccaaaatttctctcatt 10086318  T
Q  250 cctttcatatatatcaatgaagaagtcacaatatga 285  Q
    ||| ||||| | || ||||  ||| |||||||||||    
T  10086319 cctgtcataaaaataaatggcgaaatcacaatatga 10086354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 50 - 285
Target Start/End: Original strand, 10193039 - 10193274
Alignment:
Q  50 attgtcataaacttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaaga 149  Q
    |||||||  |||||||| |||| || ||||| ||| | |||||||||||||||| |||| || | ||||  |||||||  ||||| |||||||| |||||    
T  10193039 attgtcaacaacttgagccatttcctgaaaattgcgttccttcctcgctgaaatcacttgaaatttggagttgtgaaagacttgaatcattaccggaaga 10193138  T
Q  150 cagcctccctgactctcttaagcaactgtccattgtgcgatgtccattgttagtagaaaggtataaaaggaaggaacattggtccaaaattgctcacatc 249  Q
    | |||||||||| ||||| ||||  ||   ||| ||    |  || ||||||  ||||||||||||||||||||||||||||||||||||| ||| |||     
T  10193139 ctgcctccctgattctctgaagcgtctaagcatcgtatttttccctttgttaaaagaaaggtataaaaggaaggaacattggtccaaaatttctctcatt 10193238  T
Q  250 cctttcatatatatcaatgaagaagtcacaatatga 285  Q
    ||| ||||| | || ||||  ||| |||||||||||    
T  10193239 cctgtcataaaaataaatggcgaaatcacaatatga 10193274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 10503537 - 10503584
Alignment:
Q  61 cttgagacattgccagaaaactgcctcccttcctcgctgaaattactt 108  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||    
T  10503537 cttgagtcattgccagaaaactgcctcccttcctcgctgaaattactt 10503584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 146
Target Start/End: Original strand, 10091888 - 10091966
Alignment:
Q  68 cattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccaga 146  Q
    |||| |||||||||||||||||||  |||||||||| ||||| |||   ||| |||||||||||||||||||| |||||    
T  10091888 cattaccagaaaactgcctccctttgtcgctgaaatcacttcgatttgcgaattgtgaaaagcttgagtcatttccaga 10091966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 146
Target Start/End: Original strand, 10198770 - 10198848
Alignment:
Q  68 cattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccaga 146  Q
    |||| |||||||||||||||||||  |||||||||| ||||| |||   ||| |||||||||||||||||||| |||||    
T  10198770 cattaccagaaaactgcctccctttgtcgctgaaatcacttcgatttgcgaattgtgaaaagcttgagtcatttccaga 10198848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 329 - 370
Target Start/End: Original strand, 9980724 - 9980765
Alignment:
Q  329 acctcttaatattttcatatcatctcatgggtcctatgctac 370  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  9980724 acctcttaatattttcatatcatctcatgggtcctctgctac 9980765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 329 - 370
Target Start/End: Original strand, 10035261 - 10035302
Alignment:
Q  329 acctcttaatattttcatatcatctcatgggtcctatgctac 370  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  10035261 acctcttaatattttcatatcatctcatgggtcctctgctac 10035302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 329 - 370
Target Start/End: Original strand, 10130173 - 10130214
Alignment:
Q  329 acctcttaatattttcatatcatctcatgggtcctatgctac 370  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  10130173 acctcttaatattttcatatcatctcatgggtcctctgctac 10130214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 329 - 370
Target Start/End: Original strand, 10263959 - 10264000
Alignment:
Q  329 acctcttaatattttcatatcatctcatgggtcctatgctac 370  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  10263959 acctcttaatattttcatatcatctcatgggtcctctgctac 10264000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 329 - 370
Target Start/End: Complemental strand, 10430759 - 10430718
Alignment:
Q  329 acctcttaatattttcatatcatctcatgggtcctatgctac 370  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  10430759 acctcttaatattttcatatcatctcatgggtcctctgctac 10430718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 102
Target Start/End: Original strand, 10091750 - 10091784
Alignment:
Q  68 cattgccagaaaactgcctcccttcctcgctgaaa 102  Q
    |||||||||||||||||||||||||||||||||||    
T  10091750 cattgccagaaaactgcctcccttcctcgctgaaa 10091784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 102
Target Start/End: Original strand, 10198632 - 10198666
Alignment:
Q  68 cattgccagaaaactgcctcccttcctcgctgaaa 102  Q
    |||||||||||||||||||||||||||||||||||    
T  10198632 cattgccagaaaactgcctcccttcctcgctgaaa 10198666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 248
Target Start/End: Complemental strand, 11242551 - 11242500
Alignment:
Q  197 tgttagtagaaaggtataaaaggaaggaacattggtccaaaattgctcacat 248  Q
    |||||| |||||||||| ||| | ||||||||||||||||||| ||||||||    
T  11242551 tgttagaagaaaggtatcaaaagcaggaacattggtccaaaatagctcacat 11242500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 10091812 - 10091850
Alignment:
Q  61 cttgagacattgccagaaaactgcctcccttcctcgctg 99  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  10091812 cttgagtcattgccagaaaactgtctcccttcctcgctg 10091850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 10198694 - 10198732
Alignment:
Q  61 cttgagacattgccagaaaactgcctcccttcctcgctg 99  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  10198694 cttgagtcattgccagaaaactgtctcccttcctcgctg 10198732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 9852701 - 9852746
Alignment:
Q  68 cattgccagaaaactgcctcccttcctcgctgaaattacttcaatt 113  Q
    ||||||||||||||||| |||||||||| ||||||| |||| ||||    
T  9852701 cattgccagaaaactgcttcccttcctcactgaaatcacttaaatt 9852746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 171; Significance: 9e-92; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 41 - 331
Target Start/End: Complemental strand, 54736 - 54446
Alignment:
Q  41 gtttttggtattgtcataaacttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcatt 140  Q
    |||||| || ||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |   | ||| ||||||| ||||||||    
T  54736 gttttttgttttgtcaacaacttgagacattgccagaaaactgcctcccttcctcgctgaaatcacttgaattttatgattgtaaaaagctagagtcatt 54637  T
Q  141 accagaagacagcctccctgactctcttaagcaactgtccattgtgcgatgtccattgttagtagaaaggtataaaaggaaggaacattggtccaaaatt 240  Q
    ||||||||||||||||||||| ||||||||| |||||| ||| |   | || |||||||||| |||||||||||||||||||||||||||||||||||||    
T  54636 accagaagacagcctccctgaatctcttaaggaactgtacatcgatggttgcccattgttagaagaaaggtataaaaggaaggaacattggtccaaaatt 54537  T
Q  241 gctcacatccctttcatatatatcaatgaagaagtcacaatatgatagacaagttgtgttcccatttcaggtatgttccacagttcctacc 331  Q
    |||||||||||| ||||||  || ||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54536 gctcacatccctgtcatatcaataaattacaaagtcacaatatgatagacaagttgtgttcccatttcaggtatgttccacagttcctacc 54446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 329 - 370
Target Start/End: Complemental strand, 54413 - 54372
Alignment:
Q  329 acctcttaatattttcatatcatctcatgggtcctatgctac 370  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  54413 acctcttaatattttcatatcatctcatgggtcctctgctac 54372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 59 - 258
Target Start/End: Complemental strand, 17850039 - 17849840
Alignment:
Q  59 aacttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccc 158  Q
    |||||||| |||||||| ||||||||||||||||||| |||||||  ||| |||| ||  | ||| |||  |||||||| ||||||||||||||||||||    
T  17850039 aacttgagtcattgccacaaaactgcctcccttcctcactgaaatcgcttgaattttgttattgtaaaagacttgagtcgttaccagaagacagcctccc 17849940  T
Q  159 tgactctcttaagcaactgtccattgtgcgatgtccattgttagtagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctttcata 258  Q
    |  ||||||||||| ||||  ||||  |||||| ||  | |||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  17849939 ttcctctcttaagcgactggtcatttggcgatgccctatattagaagaaaggtataaaaggcaggaacattggtccaaaattgctcacatccctgtcata 17849840  T

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Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 68 - 283
Target Start/End: Original strand, 26909850 - 26910065
Alignment:
Q  68 cattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctct 167  Q
    |||| |||||||||||||||||||||||||||||||  |||||||| |     ||||| || ||||||||||||||||||||||||||||| ||||||||    
T  26909850 catttccagaaaactgcctcccttcctcgctgaaatatcttcaattttatggctgtgagaaacttgagtcattaccagaagacagcctccccgactctct 26909949  T
Q  168 taagcaactgtccattgtgcgatgtccattgttagtagaaaggtataaaaggaaggaacattggtccaaaattgctcacatccctttcatatatatcaat 267  Q
    | ||   |||   ||       || |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| | || |||    
T  26909950 tgagatgctggaaatgtcatcttgcccattgttagaagaaaggtacaaaaggaaggaacattggtccaaaattgctcacatccctgtcatacaaataaat 26910049  T
Q  268 gaagaagtcacaatat 283  Q
     || |||||| |||||    
T  26910050 caacaagtcataatat 26910065  T

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Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 61 - 243
Target Start/End: Complemental strand, 44954773 - 44954592
Alignment:
Q  61 cttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctg 160  Q
    |||||| |||| ||||||||||| || |||||||||||||||| ||||||||| | |   |||||| | |||||||| ||||||||||| ||||||||      
T  44954773 cttgagtcatttccagaaaactgtcttccttcctcgctgaaatcacttcaatttttgttttgtgaaga-cttgagtcgttaccagaagaaagcctcccca 44954675  T
Q  161 actctcttaagcaactgtccattgtgcgatgtccattgttagtagaaaggtataaaaggaaggaacattggtccaaaattgct 243  Q
    |||||||||| | ||||  ||||  |||||| ||  | | || ||||||||||| ||||||||||||||||||||||||||||    
T  44954674 actctcttaatcgactggtcatttggcgatgccctgtatcagaagaaaggtatagaaggaaggaacattggtccaaaattgct 44954592  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 11488114 - 11488164
Alignment:
Q  121 tgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaag 171  Q
    ||||||||||||| ||||||||||| ||| | |||||||||||||||||||    
T  11488114 tgtgaaaagcttgggtcattaccagtagaaaacctccctgactctcttaag 11488164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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