View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16345_low_4 (Length: 362)
Name: NF16345_low_4
Description: NF16345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16345_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 3081181 - 3081542
Alignment:
| Q |
1 |
ctgttagatccaatactgaaaaatacatacacaacaaatgaagttattaaatgcatacacattggtttgttatgtgtacaagaagatgcagtggatagac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3081181 |
ctgttagatccaatactgaaaaatacatacacaacaaatgaagttattaaatgcatacacattggtttgttatgtgtacaagaagatgcagtggatagac |
3081280 |
T |
|
| Q |
101 |
caaccatgtccaatgttgttgtaatgctagcaagtgacacaatgacacttcccaatcctaatcatccagcattttcagttggaagaaaagtagtggaagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3081281 |
caaccatgtccaatgttgttgtaatgctagcaagtgacacaatgacacttcccaatcctaatcatccagcattttcagttggaagaaaagtagtggaagg |
3081380 |
T |
|
| Q |
201 |
tgaatcatcatcaaaagcttccaatgatccttctgtcaatgaagtaacagtaacaaatattttacc----taggtagtggatataacatggtaaataatt |
296 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3081381 |
tgaatcaacatcaaaagcttccaatgatccttctgtcaatgaagtaacagtaacaaatattttacctaggtaggtagtggatataacatggtaaataatt |
3081480 |
T |
|
| Q |
297 |
tggactc-aatttcctatattattgaaattttctaaaatcacttcagtaagttcatttcagtcg |
359 |
Q |
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||||||| ||||||| |||||| ||||||| |||| |||||||||||||||||||| ||||| |
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| T |
3081481 |
tggactcaaatttcc--tattatcgaaatttcttaaagtcacttcagtaagttcatttaagtcg |
3081542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 3095618 - 3095899
Alignment:
| Q |
1 |
ctgttagatccaatactgaaaaatacatacacaacaaatgaagttattaaatgcatacacattggtttgttatgtgtacaagaagatgcagtggatagac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3095618 |
ctgttagatccaatactgaaaaatacatacacaacaaatgaagttattaaatgcatacacattggtttgttgtgtgtacaagaagatgcagtggatagac |
3095717 |
T |
|
| Q |
101 |
caaccatgtccaatgttgttgtaatgctagcaagtgacacaatgacacttcccaatcctaatcatccagcattttcagttggaagaaaagtagtggaagg |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
3095718 |
caaccatgtccaatgttgttgtaatgctagcaagtgacacaatgacacttcccaatcctaatcatccagcattttcagttggaagaaaagtaactgatga |
3095817 |
T |
|
| Q |
201 |
tgaatcatcatcaaaagcttccaatgatccttctgtcaatgaagtaacagtaacaaatattttacctaggtagtggatataa |
282 |
Q |
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| T |
3095818 |
tcaatcaacatctaaagcttccaaagatccttctgttaatgaagttacaatatcaaatgtttttcctaggtaggggatataa |
3095899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 4547313 - 4547122
Alignment:
| Q |
1 |
ctgttagatccaatactgaaaaatacatacacaacaaatgaagttattaaatgcatacacattggtttgttatgtgtacaagaagatgcagtggatagac |
100 |
Q |
| |
|
||||| ||| ||||||||||||||||||||| || ||||||||||| || || ||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
4547313 |
ctgttggatacaatactgaaaaatacatacataagcaatgaagttatgaagtgtatacatattggtttgttgtgtgtacaagaagatgcagtggatagac |
4547214 |
T |
|
| Q |
101 |
caaccatgtccaatgttgttgtaatgctagcaagtgacacaatgacacttcccaatcctaatcatccagcattttcagttggaagaaaagta |
192 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||| |
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|
| T |
4547213 |
caaccatgtccaatgttgttgtcatgctggcaagtgacacaatagcacttcccaatcctaaacatcctgcattttcagttggaagaaaagta |
4547122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 281
Target Start/End: Complemental strand, 4547117 - 4547060
Alignment:
| Q |
224 |
atgatccttctgtcaatgaagtaacagtaacaaatattttacctaggtagtggatata |
281 |
Q |
| |
|
||||||||||||| |||||||||||| || |||||||||| ||||||||| ||||||| |
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|
| T |
4547117 |
atgatccttctgttaatgaagtaacaatatcaaatatttttcctaggtaggggatata |
4547060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 39 - 179
Target Start/End: Complemental strand, 15721894 - 15721754
Alignment:
| Q |
39 |
tgaagttattaaatgcatacacattggtttgttatgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgac |
138 |
Q |
| |
|
|||||| || |||||||||||||| ||||| || ||||||||||||||||||| ||| ||||||| ||||||| |||||||| ||||||| |||||| |
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| T |
15721894 |
tgaagtaatgaaatgcatacacataggtttattgtgtgtacaagaagatgcagcagatcgaccaacaatgtccaccgttgttgtcatgctaggtagtgac |
15721795 |
T |
|
| Q |
139 |
acaatgacacttcccaatcctaatcatccagcattttcagt |
179 |
Q |
| |
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||||| || ||||| ||||| || | |||||||||||||| |
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| T |
15721794 |
acaataacccttccaaatcccaagccaccagcattttcagt |
15721754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 187
Target Start/End: Complemental strand, 15692193 - 15692058
Alignment:
| Q |
52 |
tgcatacacattggtttgttatgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacacaatgacacttc |
151 |
Q |
| |
|
|||||| |||| ||| | || ||||| ||||||||||| | ||||||||||||||||| | ||||||||||||| | || |||||||||||||| |||| |
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|
| T |
15692193 |
tgcataaacataggtcttttgtgtgttcaagaagatgcggcagatagaccaaccatgtcaactgttgttgtaatgttggctagtgacacaatgacccttc |
15692094 |
T |
|
| Q |
152 |
ccaatcctaatcatccagcattttcagttggaagaa |
187 |
Q |
| |
|
| || || || || || ||||||||| ||||||||| |
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| T |
15692093 |
caaaacccaaacaacctgcattttcaattggaagaa |
15692058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 187
Target Start/End: Complemental strand, 15696597 - 15696453
Alignment:
| Q |
43 |
gttattaaatgcatacacattggtttgttatgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacacaa |
142 |
Q |
| |
|
||||| || ||||||||||||||||| || ||||||||| ||||||| | ||| ||||||||||||||| || |||| ||||||| |||||||||| |
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|
| T |
15696597 |
gttatgaagtgcatacacattggtttattgtgtgtacaacaagatgctgcagatcgaccaaccatgtccacggtcgttgctatgctaggcagtgacacaa |
15696498 |
T |
|
| Q |
143 |
tgacacttcccaatcctaatcatccagcattttcagttggaagaa |
187 |
Q |
| |
|
|| | |||| || || || || || ||||||||||| ||||||| |
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|
| T |
15696497 |
tgcccattccaaaacccaagcaaccggcattttcagtaggaagaa |
15696453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 187
Target Start/End: Complemental strand, 15703189 - 15703053
Alignment:
| Q |
51 |
atgcatacacattggtttgttatgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacacaatgacactt |
150 |
Q |
| |
|
||||||||||| |||||| || || ||||||||||||||| ||| ||||||||||||||| || ||| | ||||||| ||||||||||||| | ||| |
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|
| T |
15703189 |
atgcatacacaatggtttattgtgcatacaagaagatgcagcagatcgaccaaccatgtccaccgtcgttctcatgctaggaagtgacacaatgcctctt |
15703090 |
T |
|
| Q |
151 |
cccaatcctaatcatccagcattttcagttggaagaa |
187 |
Q |
| |
|
|| || || | | ||||||||||||||||||||| |
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|
| T |
15703089 |
ccgaaacccatgaaagcagcattttcagttggaagaa |
15703053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 55 - 187
Target Start/End: Complemental strand, 15763724 - 15763592
Alignment:
| Q |
55 |
atacacattggtttgttatgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacacaatgacacttccca |
154 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||| ||| |||||||||| |||| ||| ||| ||||||| ||||| ||| | | ||||| |
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|
| T |
15763724 |
atacacattggtttattgtgtgtacaagaagatgcagcagatcgaccaaccatttccactgtcgttcgtatgctagggagtgatacagtagctcttccac |
15763625 |
T |
|
| Q |
155 |
atcctaatcatccagcattttcagttggaagaa |
187 |
Q |
| |
|
| || ||||| ||||||||||||||||| |||| |
|
|
| T |
15763624 |
aacccaatcaaccagcattttcagttgggagaa |
15763592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 112
Target Start/End: Complemental strand, 15804756 - 15804699
Alignment:
| Q |
55 |
atacacattggtttgttatgtgtacaagaagatgcagtggatagaccaaccatgtcca |
112 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
15804756 |
atacacattggtttactttgtgtacaagaagatgcagcagatcgaccaaccatgtcca |
15804699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 141
Target Start/End: Complemental strand, 15799142 - 15799056
Alignment:
| Q |
55 |
atacacattggtttgttatgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacaca |
141 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||| ||| ||||||| ||||||| |||||| ||||||| ||||||||| |
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|
| T |
15799142 |
atacacattggtttactttgtgtacaagaagatgcagcagatcgaccaacgatgtccaccgttgttcgcatgctagggagtgacaca |
15799056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 47593954 - 47593999
Alignment:
| Q |
39 |
tgaagttattaaatgcatacacattggtttgttatgtgtacaagaa |
84 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||| |||||| |
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|
| T |
47593954 |
tgaagttattaagtgcatacagattggtttgttatgtgttcaagaa |
47593999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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