View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16345_low_5 (Length: 358)
Name: NF16345_low_5
Description: NF16345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16345_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 11 - 343
Target Start/End: Complemental strand, 30860595 - 30860263
Alignment:
| Q |
11 |
gaagcaaaggattttataatttatttgaataaattttggcaagttggtccacaatctcttgctcatcttattaacaaccttaatgctagaaacgaccatg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30860595 |
gaagcaaaggattttataatttatttgaataaattttggcaagttggtccacaatctcttgctcatcttattaacaaccttaatgctagaaacgaccatg |
30860496 |
T |
|
| Q |
111 |
ttgattgtcttatttatgattcattcatgccttggtgcttagatgttgcaaaggaatttggaattgttggtgcttcttttctaactcaaaatcttgctat |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30860495 |
ttgattgtcttatttatgattcattcatgccttggtgcttagatgttgcaaagaaatttggaattgttggtgcttcttttctaactcaaaatcttgctat |
30860396 |
T |
|
| Q |
211 |
gaatagtatatactatcatgttcatttgggaaagttgaaacctccctttgctgagcaagagatttctcttcctgcacttccttaattacagcatagggat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30860395 |
gaatagtatatactatcatgttcatttgggaaagttgaaacctccctttgctgagcaagagatttctcttcctgcacttcctcaattacagcatagggac |
30860296 |
T |
|
| Q |
311 |
atgccttgtttctactttacatatgaagaagat |
343 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
30860295 |
atgccttgtttctactttacatatgaagaagat |
30860263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 11 - 343
Target Start/End: Complemental strand, 30818586 - 30818254
Alignment:
| Q |
11 |
gaagcaaaggattttataatttatttgaataaattttggcaagttggtccacaatctcttgctcatcttattaacaaccttaatgctagaaacgaccatg |
110 |
Q |
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|||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30818586 |
gaagcaaaggattttaaattgtatttgaataaattttggcaagttggtccacaatctcttgctcatcttattaacaaccttaatgctagaaacgaccatg |
30818487 |
T |
|
| Q |
111 |
ttgattgtcttatttatgattcattcatgccttggtgcttagatgttgcaaaggaatttggaattgttggtgcttcttttctaactcaaaatcttgctat |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
30818486 |
ttgattgtcttatttatgattcattcatgccttggtgcttagatgttgcaaaggaatttggaattgttggtgcttcttttctaacacaaaatcttgttat |
30818387 |
T |
|
| Q |
211 |
gaatagtatatactatcatgttcatttgggaaagttgaaacctccctttgctgagcaagagatttctcttcctgcacttccttaattacagcatagggat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||| ||||||| | |||||| |
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| T |
30818386 |
gaatagtatatactatcatgttcatttgggaaagttgaaacctccctttgttgaacaagagattactcttcctgcacttcctcaattacaacctagggac |
30818287 |
T |
|
| Q |
311 |
atgccttgtttctactttacatatgaagaagat |
343 |
Q |
| |
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||||||| |||||||||||| |||||| ||||| |
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| T |
30818286 |
atgccttctttctactttacctatgaacaagat |
30818254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 110 - 235
Target Start/End: Complemental strand, 30841573 - 30841448
Alignment:
| Q |
110 |
gttgattgtcttatttatgattcattcatgccttggtgct-tagatgttgcaaaggaatttggaattgttggtgcttcttttctaactcaaaatcttgct |
208 |
Q |
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||||||||| |||||||||||||||| | |||||| ||| | |||||||| ||| ||||||||||||||||| | ||| ||| ||||||||| | | |
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| T |
30841573 |
gttgattgtgttatttatgattcattttttccttgg-gctcttgatgttgctaagagatttggaattgttggtgttacttatctcactcaaaatatgtca |
30841475 |
T |
|
| Q |
209 |
atgaatagtatatactatcatgttcat |
235 |
Q |
| |
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|||||||||| ||||||||||||||| |
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| T |
30841474 |
gtgaatagtatttactatcatgttcat |
30841448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 317
Target Start/End: Complemental strand, 30856285 - 30856079
Alignment:
| Q |
111 |
ttgattgtcttatttatgattcattcatgccttggtgcttagatgttgcaaaggaatttggaattgttggtgcttcttttctaactcaaaatcttgctat |
210 |
Q |
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|||||||| ||||||||||| ||||| | |||||| | |||||||| ||| | |||||||| |||| | ||||| || ||||||||| || | | |
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| T |
30856285 |
ttgattgtgttatttatgatgcattctttccttggactcttgatgttgctaagagacttggaatttttggggtatctttcctcactcaaaatgttagtgt |
30856186 |
T |
|
| Q |
211 |
gaatagtatatactatcatgttcatttgggaaagttgaaacctccctttgctgagcaagagatttctcttcctgcacttccttaattacagcatagggat |
310 |
Q |
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|||||||| ||||| ||||||| | ||||||| |||| | |||| ||| || |||||||||||| ||||| | |||||| || |||| |||||||| |
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| T |
30856185 |
taatagtatttactaccatgttcttgtgggaaaattgagagttccccttgatgtgcaagagatttcacttccagtgcttcctcaactacaacatagggac |
30856086 |
T |
|
| Q |
311 |
atgcctt |
317 |
Q |
| |
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||||||| |
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| T |
30856085 |
atgcctt |
30856079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 30847964 - 30847840
Alignment:
| Q |
110 |
gttgattgtcttatttatgattcattcatgccttggtgct-tagatgttgcaaaggaatttggaattgttggtgcttcttttctaactcaaaatcttgct |
208 |
Q |
| |
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||||||||| |||||||| ||||||| | |||||| ||| | |||||||| ||| ||||||||||||||||| ||||| ||| ||||||||| | |
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| T |
30847964 |
gttgattgtgttatttataattcattttttccttgg-gctcttgatgttgctaagagatttggaattgttggtgtttcttatctcactcaaaatatgttg |
30847866 |
T |
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| Q |
209 |
atgaatagtatatactatcatgttca |
234 |
Q |
| |
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|||||||||| |||||||||||||| |
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| T |
30847865 |
gtgaatagtatttactatcatgttca |
30847840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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