View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16345_low_8 (Length: 283)
Name: NF16345_low_8
Description: NF16345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16345_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 12 - 259
Target Start/End: Original strand, 39042316 - 39042566
Alignment:
| Q |
12 |
acagagaatccaaatcccaaatccattgaattggcaaggcaataattgcaatcaacattggtttctttgacccataaattcttttccaactccaaacta- |
110 |
Q |
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| T |
39042316 |
acagagaatccaaatcccaaatccattgaattggcaaggcaataattgcaatcaacattggtttctttgacccataaattcttttccaactccaaactag |
39042415 |
T |
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| Q |
111 |
--tataattacacctacgttttcattttaatatcacaaaacggcatgtaccgtacaacaatgctaatcaattctcttaaaattgttcgtaatagtggtga |
208 |
Q |
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| T |
39042416 |
tatataattactcctacgttttcattttaatatcacaaaacggcatataccgtaccacaatgctaatcaattctcttaaaattgttcgtaatagtggtga |
39042515 |
T |
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| Q |
209 |
gcgtgtatcgggaaaaacaaaagtttatatttgcatctaatcgaattatat |
259 |
Q |
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| T |
39042516 |
gcgtgtatcgggaaaaacaaaagtttatatttgcatctaatcgaattatat |
39042566 |
T |
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