View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16346_low_1 (Length: 545)
Name: NF16346_low_1
Description: NF16346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16346_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 99 - 526
Target Start/End: Complemental strand, 10194538 - 10194107
Alignment:
| Q |
99 |
gaacctgtgattttgctgattagctttagtggatttaaacggtgttttaatcaaaagctattgtattgagatgagctgtgctggcttgagttttggaaac |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10194538 |
gaacctgtgattttgctgattagctttagtggatttaaacggtgttttaatcaaaagctattgtattgagatgagctgtgctggcttgagttttggaaac |
10194439 |
T |
|
| Q |
199 |
aaagcattcgattttgaataagtaacgcatttaaagataaatatgatgaaagacaagcgaagtgcaaaagatccgatcactacttatacggtttagggtt |
298 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10194438 |
aaagcattctattttgaataagtaacgcatttaaagataaatatgatgaaagacaagcgaagtgcaaaagatccgatcactacttatacggtttagggtt |
10194339 |
T |
|
| Q |
299 |
ttct---------tgtcaattataatttgcgatttatgatcaaacactgttaggcggcatgttcagtaacagatgagttcgaattccttgatcctgatat |
389 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10194338 |
ttctggtttttcttgtcaattataatttgcgatttatgatcaaacactgttaggctgcatgttcagtaacagatgagttcgaattccttgatcctgatat |
10194239 |
T |
|
| Q |
390 |
caggatgcctggaatggtgttagggacagaaaattttgataagttccatgttgcagtgaatgcaattgatgcgatgcagtttatgacaaattgcaatacc |
489 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
10194238 |
caggatgcctggaatggtgttagggacagaaaattttgataagttccatgttgcagtgaatgcaattgattc-----agtttatgacaaattgcaatacc |
10194144 |
T |
|
| Q |
490 |
agattatgtactactggtataaggttatagaacacat |
526 |
Q |
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| T |
10194143 |
agattatgtactactggtataaggttatagaacacat |
10194107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 99 - 234
Target Start/End: Original strand, 19459169 - 19459304
Alignment:
| Q |
99 |
gaacctgtgattttgctgattagctttagtggatttaaacggtgttttaatcaaaagctattgtattgagatgagctgtgctggcttgagttttggaaac |
198 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19459169 |
gaacctgtgattttgctgattagcttcagtggatttaaaccgtattttaatcaaaagctattgtattgagatgagctgtgctggcttgagttttggaaac |
19459268 |
T |
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| Q |
199 |
aaagcattcgattttgaataagtaacgcatttaaag |
234 |
Q |
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|||| || ||||||||| |||||||||||| |||| |
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| T |
19459269 |
aaagagtttgattttgaacaagtaacgcattcaaag |
19459304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 34962606 - 34962678
Alignment:
| Q |
1 |
ttccgccgggtgaggtccgtttaatccgttctgacttaaaaactctgtagtgttactgtactcactaatgttg |
73 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34962606 |
ttccgccgggtgaggtccgtttaatccgttctgacttaaaaactctgtagtgttactgtactcactaatgttg |
34962678 |
T |
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