View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16346_low_2 (Length: 414)
Name: NF16346_low_2
Description: NF16346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16346_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 204 - 253
Target Start/End: Original strand, 14331900 - 14331949
Alignment:
| Q |
204 |
gattaaaagtttgaaggtgcagcaaatgaagatggtaggaaaccaagcat |
253 |
Q |
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| T |
14331900 |
gattaaaagtttgaaggtgcagcaaatgaagatggtaggaaaccaagcat |
14331949 |
T |
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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 204 - 253
Target Start/End: Original strand, 9988867 - 9988916
Alignment:
| Q |
204 |
gattaaaagtttgaaggtgcagcaaatgaagatggtaggaaaccaagcat |
253 |
Q |
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| T |
9988867 |
gattaaaagtttgaaggtgcatcaaatgaagacggtaggaaaccaagcat |
9988916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 204 - 253
Target Start/End: Complemental strand, 25329984 - 25329935
Alignment:
| Q |
204 |
gattaaaagtttgaaggtgcagcaaatgaagatggtaggaaaccaagcat |
253 |
Q |
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| T |
25329984 |
gattgaaagtttgaaggtgcagcaaatgaagatggcaggaaaccaagcat |
25329935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 324 - 395
Target Start/End: Complemental strand, 25329685 - 25329614
Alignment:
| Q |
324 |
attgtactaaacaaatacaccacctcgatttcctacagcaagatgtgtaacccatggccaacatgggcttag |
395 |
Q |
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| T |
25329685 |
attgcactaagcaaatacaagaccttgatttcctgcaggaagatgtcgaactcatggccaacatgggcttag |
25329614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 25325825 - 25325792
Alignment:
| Q |
1 |
tgttataggagacaagcaaatcgagttgttcaaa |
34 |
Q |
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| T |
25325825 |
tgttataggagacaagcaaattgagttgttcaaa |
25325792 |
T |
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