View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16346_low_3 (Length: 360)
Name: NF16346_low_3
Description: NF16346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16346_low_3 |
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| [»] scaffold0072 (1 HSPs) |
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Alignment Details
Target: scaffold0072 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 47 - 342
Target Start/End: Original strand, 41674 - 41969
Alignment:
| Q |
47 |
gttaaaaacatcactagatctgagatgatgctgagaagagaaaaaggattatgttattattgtgatgaacgattctctatatctcataaatgtccaaatc |
146 |
Q |
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| T |
41674 |
gttaaaaacatcactagagctgagatgatgctcagaagagaaaaaggattatgctattattgtgatgaacgattctctatatctcataaatgtccaaatc |
41773 |
T |
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| Q |
147 |
gtcattatttcttatttcaaactgaagaagaagaagaacctgacccaccaccaccgcaaatcacaccatcaactgaccctgaaacaccacctattgttac |
246 |
Q |
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| T |
41774 |
gtcattatttcttattccaaactgaagaagaagaagaacctgaaccaccaccacaacaaatcacaccatcagctgaccctgaaacaccacctattgttac |
41873 |
T |
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| Q |
247 |
ggaggagcaccacttgtcactgaatgccttgaacggttctgctcgtaaaggcaccatgcggttccacggtcaaattcagggtattgctatcacgat |
342 |
Q |
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| T |
41874 |
ggaggagcaccacttgtcactgaatgccttgaacggttctgctcgtaaaggcaccatgcggttccacagtcaaattcagggtattgctatcacgat |
41969 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 8596019 - 8596080
Alignment:
| Q |
80 |
agaagagaaaaaggattatgttattattgtgatgaacgattctctatatctcataaatgtcc |
141 |
Q |
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| T |
8596019 |
agaagagaaaaaggtttatgttatttttgtgatgagaaattctcattttctcataaatgtcc |
8596080 |
T |
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