View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16346_low_6 (Length: 210)
Name: NF16346_low_6
Description: NF16346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16346_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 3535858 - 3536035
Alignment:
| Q |
18 |
aaatttacctcattgaatcaacaatcatggtgaattcccaacgaaggcggagtaataaaattcacattcgcccaattaaacaccttaattcacactttgg |
117 |
Q |
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| T |
3535858 |
aaatttacctcattgaatcaacaatcatggtgaattcccaacgaaggcggagtaataaaattcacattcgcccaattaaacaccttaattcacactttgg |
3535957 |
T |
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| Q |
118 |
ccacaaagtcacaacgaagaaaaaggtgtgtggccaaggtttaggtcactaacactatacaattgcaataactctctg |
195 |
Q |
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| T |
3535958 |
ccacaaagtcacaacgaagaaaaaggtctgtggccaaggtttaggtcactaacactatacaattgcaataactctctg |
3536035 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 142
Target Start/End: Original strand, 43976404 - 43976480
Alignment:
| Q |
66 |
ggagtaataaaattcacattcgcccaattaaacaccttaattcacactttggccacaaagtcacaacgaagaaaaag |
142 |
Q |
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| T |
43976404 |
ggagtaataaaattcaaattcacccaattaagcaccataacccacaattttgccacaaactcacaatgaataaaaag |
43976480 |
T |
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